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Hello! Can you help point me to what I should do if I want to finetune this model on a novel set of complexes that are not in any of your datasets?
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Opening up a fasta file in vscode with the fasta-taylor language mode results in this at start:
![image](https://user-images.githubusercontent.com/108769308/229213294-1565efa4-5061-4a51-a9ba-ad54b7ac…
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I'm trying to use [HuggingFace's ESMFold](https://huggingface.co/facebook/esmfold_v1) to predict 3D protein structures from the protein sequence. I've got a PDB output that loads just fine on the [RCS…
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I would like to simple color a part of the molecule to green, and the rest to red. Lets say from residue 10-30 in the A chain to green, rest to red.
I know there is a similar question here, howeve…
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Dear Dr. Patel
After installing the PyWATER pluging and do the tutorial, I found this error
Error: 3
Exception in Tk callback
Function: (type: )
Args: ()
Traceback (innermost last):
…
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Here are several PDBs of the human adenosine receptor ADORA2 bound to various ligands, made using X-ray crystallography:
https://tinyurl.com/yc7bckxx (links to rcsb.org).
Have to come up with a …
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Can `easy-cluster` take one of the external databases as input?
ie with one of these that you have listed
```
Name Type Taxonomy Url
- Alphafold/UniProt Aminoacid …
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We have one viewer focused on variants, modifications and all sequence features, that should only Pfam domains
then we have the protein domains and families feature table showing all Intero famil…
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What is the best way to protonate a ligand / small molecule?
I think I successfully managed to protonate my 58H ligand with **pdb4amber** (using the `--add-hydrogens` option) and I checked the fil…
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## Expected Behavior
I was testing foldseek multimer search on these two structurally similar PDBs obtained from RCSB PDB (also tried PDB-redo). However, the results are not returned as the files a…