steineggerlab foldseek issues

steineggerlab / foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

https://foldseek.com

GNU General Public License v3.0

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issues

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Default value for -c in easy-cluster is wrong

#299 chao9916 opened 1 day ago
0
Hope to solve createdb for .tar

#298 ChaSooyoung closed 2 days ago
0
Maybe solved .gz createdb

#297 ChaSooyoung closed 2 days ago
0
ㄴsolve createdb for .gz

#296 ChaSooyoung closed 3 days ago
0
solve createdb for .gz

#295 ChaSooyoung closed 3 days ago
0
Error using PDB and CATH50 downloaded databases

#294 Fede112 opened 3 days ago
5
Possible docs typos

#293 calebthomas259 opened 1 week ago
0
how i limit the minimum align length

#292 yonatan212 closed 3 days ago
0
Extracting sequences and PDB files described in the result.m8 hits file

#291 rakeshr10 opened 1 week ago
2
Kmer matching step died

#290 yonatan212 closed 1 week ago
0
A observed discrepency between alignment-type 3Di+AA / 3Di

#289 Wangchentong opened 2 weeks ago
2
"Prediction failed" when createdb --gpu 1

#288 sevengo8378 opened 2 weeks ago
6
expired certificate when downloading ProstT5 database

#287 vmkhot closed 2 weeks ago
2
Multi-segmented CATH members

#286 Pooryamb closed 1 week ago
8
GPU flag not recognized in createdb/easysearch for ProstT5

#285 rakeshr10 opened 2 weeks ago
29
Segmentation fault when using --allow-deletion with result2msa

#284 danny305 opened 3 weeks ago
4
Is it possible to update a DB?

#283 ekiefl closed 2 weeks ago
2
Getting E-values for Foldseek Cluster

#282 Loganz97 opened 3 weeks ago
1
gemmiwrapper's exceptions abort the process instead of skipping

#281 milot-mirdita closed 2 weeks ago
0
Using github command didn't download full afdb?

#280 bregman3 opened 4 weeks ago
2
Easy search pulls same accession ID multiple times?

#279 bregman3 opened 4 weeks ago
4
Minimum number of members in a cluster

#278 jmoojun opened 4 weeks ago
1
HHsearch Error and missing process files

#277 zxx666666 closed 4 weeks ago
1
Input taxonomy database is missing when using createdb

#276 kchennen opened 1 month ago
1
How to download AFDB clusters?

#275 jzhanghzau opened 1 month ago
3
Foldseek-multimer returns non-interacting chains

#274 gezmi opened 1 month ago
3
How to convert the 3D descriptors back to PDB file?

#273 AaranWang closed 1 month ago
3
Retrain Foldseek's VQ-VAE and compile it with the main program.

#272 YuanLiu-SJTU opened 1 month ago
1
No 3D alignment shown in webserver viewer

#271 atn-journal opened 1 month ago
9
(core dumped) "$MMSEQS" createcomplexreport "${QUERY}" "${TARGET}" "${SCORECOMPLEX_RESULT}" "${REPORT}" ${REPORT_PAR}

#270 dabianzhixing opened 1 month ago
18
Cannot use createdb to merge two existing db

#269 pisle0 closed 1 month ago
1
Error std::out_of_range when creating database with specific cif files

#268 QuanEvans closed 1 month ago
4
Potential permission issue when trying to create foldseek db

#267 martinez-zacharya opened 2 months ago
1
Create human-readable taxonomy lookup table from precomputed database

#266 cvigilv opened 2 months ago
4
How to conduct clusters based on global structures instead of local substructures?

#265 krinoz opened 2 months ago
2
Job kept being stucked in the pending state

#264 hdahoiowjeasc closed 2 months ago
7
Comparison of specified structure fragments

#263 huizhen2014 opened 2 months ago
1
3di for multi-chain protein

#262 Zhu-Siqi closed 2 months ago
2
remove .cif/.pdb in filenames & remove _MODEL_ # in .lookup

#261 ChaSooyoung closed 1 month ago
0
Can't find exact match in PDB

#260 smilenaderi opened 2 months ago
2
`--taxon-list` option not accepting multiple taxonomy IDs correctly

#259 yonesora56 closed 2 months ago
5
precomputed pdb lookup and sequence don't line up

#258 tn-7 opened 3 months ago
1
easy-search hangs on scop40 test

#257 rcedgar opened 3 months ago
12
Backbone only search returns no hit.

#256 realfenston opened 3 months ago
4
Generate both alignmnet tsv file and pdbs

#255 smilenaderi closed 3 months ago
7
Fix structdatabases.sh

#254 TigerWindWood closed 1 month ago
1
There seem to be some minor issues with downloading pre-generated databases using databases.

#253 TigerWindWood opened 3 months ago
2
pre-trained 3Di embedding

#252 chooyu1998 closed 3 months ago
2
Searching against all the databases and specific organism

#251 ahof1704 closed 3 months ago
2
Foldseek Segmentation fault => Error: target createdb died

#250 kchennen opened 3 months ago
1