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steineggerlab
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foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
https://foldseek.com
GNU General Public License v3.0
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foldseek easy-cluster iteratively with different batches at different times
#249
josephhughes
opened
3 months ago
1
Aligned 3Di alphabet sequence MSA Fasta file generation
#248
rakeshr10
opened
4 months ago
1
Cluster more detail information about ·foldseek easy-cluster ·
#247
Golden-proteogenomics
opened
4 months ago
0
Count of match states
#246
davtjon
opened
4 months ago
0
AFDB cluster Reps for Alphafold/UniProt50-minimal
#245
timghaly
closed
3 months ago
2
Test
#244
Woosub-Kim
closed
4 months ago
0
The best probability and LDDT score to filter in easy-search
#243
Jigyasa3
opened
4 months ago
4
API access to FoldSeek
#242
TerkaSlan
opened
4 months ago
0
Error: Alignment step died - new problem after previous successful use
#241
ruthalee
closed
4 months ago
4
question about optimizing foldseek for metagenomics gene catalogue
#240
szimmerman92
opened
4 months ago
7
scorecomplex: nearest neighbors and rbh filter
#239
Woosub-Kim
closed
4 months ago
0
Rotation matrix
#238
yonatan212
closed
4 months ago
4
easy-cluster with external db
#237
xnought
opened
5 months ago
3
please link server app github in README
#236
colindaven
closed
4 months ago
1
difference between Alphafold/UniProt50 and Alphafold/UniProt50-minimal
#235
dadush1
opened
5 months ago
1
A Simple Question about Foldseek
#234
tzjsdss
opened
5 months ago
0
-NAN Output for LDDT Score
#233
Dylan-Barcelos
opened
5 months ago
4
CATH domains in local foldseek
#232
dadush1
closed
4 months ago
2
How can I perform domain clustering by foldseeek?
#231
WongQh
opened
5 months ago
0
Easy search: how do I output both sequence similarity and structure-sequence/3Di similarity?
#230
danny305
opened
5 months ago
1
Easy-Cluster CLI sensitivity flag documentation bug?
#229
danny305
opened
5 months ago
4
Easy cluster - Cannot use --lddt-threshold with --sort-by-structure-bits 0
#228
ruthalee
opened
5 months ago
5
Questions regards to `easy-cluster` dying during Prefilter step 0
#227
Immortals-33
opened
5 months ago
1
Question: Alter 3Di weights?
#226
dstern
opened
5 months ago
0
Back Translate 3Di Tokesn to PDB Format
#225
mahdip72
closed
5 days ago
1
Maybe the sequences length is less than 14 residues.
#224
tomato-cmyk
opened
6 months ago
1
How to create a databases?
#223
tomato-cmyk
opened
6 months ago
7
python3 API
#222
AntoniaFeilden
opened
6 months ago
1
How does the process to calculate alnTMscore
#221
jov131
opened
6 months ago
0
Inquiry on Establishing Correspondence between 3Di Structure and Amino Acid Sequences in the Database
#220
CNwangbin
closed
6 months ago
2
Get the Latent representations only
#219
daniel-dpq
closed
4 months ago
1
foldseek easy-cluster get error by conda install foldseek
#218
CAVUling
opened
6 months ago
1
How is the PDB100 database prepared?
#217
BinhongLiu
closed
4 months ago
1
--cluster-search 1 throws error
#216
DS-ribo
closed
6 months ago
2
Questions on effects and usage of --num-iterations options
#215
yakomaxa
closed
6 months ago
2
createdb extracts (0,0,0) coordinates for residues that don't have C-alphas
#214
milot-mirdita
closed
4 months ago
0
Closest neighbour to virtual centre
#213
genomeboy
opened
7 months ago
0
Possibility to foldseek against only a PDB-chain
#212
jeversbioprodict
opened
7 months ago
1
Foldseek TMAlign option alntmscore inconsistent with tmalign server results.
#211
WesleyMBotelloSmith
opened
7 months ago
0
What lndb is doing ?
#210
DomML
closed
7 months ago
2
foldseek failed to search/process Pymol generated files
#209
igortru
opened
7 months ago
2
sync with upstream master
#208
gamcil
closed
7 months ago
0
What exactly does each class in the foldseek_cluster result represent?
#207
hasaiki136
opened
7 months ago
1
TM-score reported in the HTML is different from the one in the tabular output
#206
apcamargo
opened
7 months ago
0
Unable to cluster large set of similar proteins
#205
Raul-araya-secchi
opened
8 months ago
7
Can I search for similar protein structures to those in my query database and pick out representative based on clustering?
#204
dengvicki
closed
8 months ago
0
How is the PDB100 database prepared?
#203
BinhongLiu
closed
4 months ago
1
Download pre-generated afdb.tar.gz
#202
LTEnjoy
closed
7 months ago
4
How can I extract uniprot ids and corresponding foldseek sequences from a pre-generated database?
#201
LTEnjoy
opened
8 months ago
9
Error when Creating DB from Existing DB File
#200
diegozea
opened
8 months ago
2
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