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steineggerlab
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foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
https://foldseek.com
GNU General Public License v3.0
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Error when Creating DB from Existing DB File
#200
diegozea
opened
8 months ago
2
Rerun clustering with different parameters
#199
PawelSzczerbiak
closed
4 months ago
3
remove ligand and alt res within chain
#198
NatureGeorge
closed
7 months ago
3
[QUESTION] How to create a custom database from 20,000 pdbs that I made?
#197
DaRinker
closed
8 months ago
2
Custom 3di alphabet
#196
awfderry
closed
8 months ago
2
For easy-cluster how to specify --alignment-type?
#195
linda5mith
opened
8 months ago
1
Could not download the databases
#194
yuyyk-cpu
closed
8 months ago
1
Total amount of retrieved proteins
#193
bregman3
opened
8 months ago
1
All-by-all alignment issue
#192
daniel-dpq
opened
8 months ago
1
Abnormally high RMSD for alignments displayed on web server
#191
diegoeduardok
opened
9 months ago
0
Info request re GMGC structure db on webserver
#190
pottsj21
closed
8 months ago
1
`structureto3didescriptor` yield wrong sequence output when it meets alternative residue conformation and amino acid ligands
#189
NatureGeorge
closed
7 months ago
2
get predicted structure from amino acid sequence as input in command line version
#188
Jigyasa3
opened
9 months ago
2
A tutorial for the prediction of domain family by local structure similarity
#187
CrazyHsu
opened
9 months ago
3
How a virtual amino acid is represented in 3Di Sequence?
#186
suresh-pokharel
opened
9 months ago
0
foldseek server - two different values of the TM-Score?
#185
aokosinska
opened
9 months ago
1
download the raw pdb files of PDB100 database
#184
BinhongLiu
closed
8 months ago
1
Explanation of complex search
#183
mrauha
opened
9 months ago
6
Protein Domain Search Query Returns Only One Hit Instead of Multiple Hits
#182
yonatan212
opened
9 months ago
2
SW vs local NW
#181
igortru
opened
9 months ago
0
The search results do not match the condition
#180
jiaweiguan
closed
9 months ago
1
convertalis issue on `--cluster-search 1`
#179
YoshitakaMo
closed
9 months ago
5
3di substation matri
#178
yonatan212
opened
10 months ago
1
Expanding cluster searches with expandaln
#177
srom
closed
9 months ago
6
afdb50clusearch.tar.gz is corrupted?
#176
YoshitakaMo
closed
10 months ago
1
compatible conda environment?
#175
twaksman001
closed
10 months ago
3
Question: Does foldseek work well on structures with no aa sequences?
#174
ML-J
opened
10 months ago
2
Trouble downloading databases after re-installing foldseek
#173
farreve
opened
10 months ago
2
How to obtain a complete PDB through foldssek?
#172
jiaweiguan
opened
10 months ago
9
Generate 3Di tokens from a PDB structure file
#171
suresh-pokharel
closed
10 months ago
1
Trivial spelling mistake
#170
KevinDuringWork
closed
10 months ago
1
compilation fails under gcc 13
#169
joelb123
closed
11 months ago
2
Multiple Structure Alignment with Foldseek
#168
lavibig
opened
11 months ago
4
Filter criteria for output results
#167
dabaoniu
opened
11 months ago
1
negative bits score
#166
twaksman001
opened
11 months ago
5
Can foldseek generate the html output with only top ten hits?
#165
azureycy
opened
11 months ago
1
Use global aligner
#164
gamcil
closed
11 months ago
0
Does (or will) Foldseek support other types of molecules?
#163
amorehead
opened
11 months ago
3
Lookup file missing
#162
2mal16
closed
11 months ago
2
Webserver - selenomethionine position is not picked up from PDB structure
#161
KCMYS
opened
12 months ago
2
Segfault on prefiltering step with large k-mer databases
#160
richardshuai
opened
12 months ago
2
Fix typos in README.md
#159
amorehead
closed
12 months ago
1
Foldseek API returning "500 Internal Server Error"
#158
DaRinker
closed
12 months ago
1
about taxid
#157
fire537
opened
12 months ago
4
Increasing cluster stringency?
#156
richardshuai
closed
1 year ago
3
typo in README.md - strutural
#155
igortru
closed
4 months ago
18
Mutliple databases align questions
#154
yang-nei
opened
1 year ago
1
API access rate upper limit.
#153
johnnytam100
opened
1 year ago
7
[Web service] "Error loading search result"
#152
kaymccoy
closed
1 year ago
2
database cluster by pure structure similarity
#151
Wangchentong
opened
1 year ago
2
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