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Hi, I am trying to run gene burden on LOF variants. I only have one mask so my mask_file looks:
Mask1 LoF
And my annotation file looks:
1:69849:G:A OR4F5 exon LoF
1:69869:T:A OR4F…
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First all, thanks for this fork, seeing UPDI support in avarice looks really promising!
For my issue: I'm unsure how to start avarice for my particular board.
It's a Arduino Nano Every with a A…
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Similar but now a closed Issue : https://github.com/satijalab/seurat/issues/4062
Error: Given reference.assay (SCT) has not been processed with SCTransform. Please either run SCTransform or set n…
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I'm running PURPLE in tumor-only mode after having run COBALT and AMBER also in tumor-only mode.
PURPLE is for some reason outputting VAFs >>> 1 for the SNPs it's using. Here are a few lines from …
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Hi there,
Congrats on a wonderful package. And thank you for the most comprehensive tutorial! Much appreciated.
I am trying to derive my own set of covariates for hg38.
I have downloaded repliseq d…
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#74 and #81 are similar cases, that the genomics variant (usually deletion) includes the end of a gene or transcript. Although we haven't seen it yet, but I think it'll also be an issue when the exon …
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Hi,
Actually, This is my 1st time in working with ARM Cortex Chip.. Moreover, I want to make a Free_CMSIS_DAP on my own.
You can see my documentation.. By clicking [Here](http://fabacademy.org/20…
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Will this CMSIS-DAP programmer/debugger work on the D51 (M4) or just the D11/D21 (M0+) MCUS?
We have been able to successfully flash D11/D21 with your codebase (using Keil).
In Keil, the DAP deb…
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Hi Artem,
I ran sambamba depth in base mode and provided a standard bed file (0-based start and 1-based end from UCSC genome browser) as the regions file. I noticed that sambamba depth was calculatin…
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Some potential changes for r0.3:
- [x] Re-spec 3V3 regulator to reduce ripple; or at the least, remove its bypass capacitor.
- [x] Improve grounding / thermal connections for the USB PHYs.
- [x] …