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uclahs-cds
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package-moPepGen
Multi-Omics Peptide Generator
https://uclahs-cds.github.io/package-moPepGen/
GNU General Public License v2.0
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Format requirement of VEP
#882
hsiaoyi0504
opened
2 weeks ago
0
Update Citation
#881
zhuchcn
closed
2 weeks ago
0
Update tool-Docker-action to v2.1.0
#880
nwiltsie
closed
1 month ago
2
Use backplicing site for circRNA ID
#879
zhuchcn
closed
1 month ago
0
circRNA GVF should include backsplicing site
#878
zhuchcn
closed
1 month ago
0
Fix Variant Peptide ID
#877
zhuchcn
closed
3 months ago
0
Fix splitFasta: NovelORF peptides from coding transcripts not recognized correctly
#876
zhuchcn
closed
3 months ago
0
Fix VariantPeptidePool Peptide not recognized correctly during validation
#875
zhuchcn
closed
4 months ago
0
callNovelORF & callAltTrans error: ':' is not a valid unambiguous letter for protein
#874
zhuchcn
closed
4 months ago
0
Upgrade to latest static analysis Action
#873
nwiltsie
closed
4 months ago
0
Update documentation to install from PyPI
#872
zhuchcn
closed
5 months ago
0
Set PyPI URL in GitHub Action
#871
zhuchcn
closed
5 months ago
0
doc: add bioRxiv link to docs
#870
zhuchcn
closed
6 months ago
0
doc: add bioRxiv link
#869
zhuchcn
closed
6 months ago
0
fix (cicd): add write permission
#868
zhuchcn
closed
6 months ago
0
Fix pypi.yaml
#867
zhuchcn
closed
6 months ago
0
Make docker image public
#866
zhuchcn
closed
5 months ago
2
Add GitHub action to publish to PyPI
#865
zhuchcn
closed
6 months ago
7
Rename callNoncoding to callNovelORF
#864
zhuchcn
closed
6 months ago
0
Rename callNoncoding to callNovelORF
#863
zhuchcn
closed
6 months ago
0
Novel ORF from coding transcripts
#862
zhuchcn
closed
6 months ago
3
Update CHANGELOG.md
#861
zhuchcn
closed
6 months ago
0
Cache genome sequence
#860
zhuchcn
opened
6 months ago
0
`--backsplicing-only` added to only call backsplicing site spanning peptides
#859
zhuchcn
closed
6 months ago
1
Allow only output backsplicing site spaning peptides for circRNAs
#858
zhuchcn
closed
6 months ago
0
Fix release date in changelog
#857
zhuchcn
closed
6 months ago
0
Peptide Table saved by callVariant
#856
zhuchcn
closed
7 months ago
10
Add basic summary to callVariant output
#855
zhuchcn
closed
7 months ago
0
Add `updateIndex`
#854
zhuchcn
closed
7 months ago
1
Allow generating different canonical peptide pool with different cleavage parameters
#853
zhuchcn
closed
7 months ago
0
Swtich to use python's standard `logging` pacakge for logging
#852
zhuchcn
closed
7 months ago
0
Fix UTR in ENSEMBL style GTF
#851
zhuchcn
closed
7 months ago
0
Refactor code for index directory
#850
zhuchcn
closed
7 months ago
3
fix (moPepGen): cyclic-import
#849
zhuchcn
closed
7 months ago
1
fix (docs): added additional info required by Nature
#848
zhuchcn
closed
7 months ago
1
fix (mergeFasta): remove redundant FASTA header entries
#847
zhuchcn
closed
7 months ago
1
Remove redundante FASTA header entries in mergeFasta
#846
zhuchcn
closed
7 months ago
0
Fix typo in REDItolsParser
#845
zhuchcn
closed
7 months ago
0
Add --timeout-second and retry to callVariant
#844
zhuchcn
closed
7 months ago
2
fix (callVariant): no reference node issue
#843
zhuchcn
closed
7 months ago
0
[callVariant] Out edge type not assigned correctly when aligning variant bubbles
#842
zhuchcn
closed
7 months ago
0
Fix parseVEP to handle insertions in star-inclusion format
#841
zhuchcn
closed
7 months ago
0
[parseVEP] Insertion can be either start- or end-inclusion
#840
zhuchcn
closed
7 months ago
0
[parseVEP
#839
zhuchcn
closed
7 months ago
0
Fix cyclic import
#838
zhuchcn
closed
7 months ago
0
Fix The Usage Section in Docs
#837
zhuchcn
closed
8 months ago
9
Github pages link for documentation is broken
#836
zhuchcn
closed
8 months ago
1
Fix circRNA variant ID exon/intron order
#835
zhuchcn
closed
8 months ago
0
Add fuzz test log
#834
zhuchcn
closed
9 months ago
1
Coordinate of Noncaonincal Peptide
#833
zhuchcn
closed
7 months ago
6
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