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uclahs-cds / package-moPepGen

Multi-Omics Peptide Generator
https://uclahs-cds.github.io/package-moPepGen/
GNU General Public License v2.0
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cancer-genomics genomics neoantigen proteogenomics proteomics

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Multi-Omics Peptide Generator

Lifecycle:Stable Tests PyPI - Version Docker Documentation License DOI:10.1101/2024.03.28.587261

moPepGen (multi-omics peptide generator) uses data from one or more omics experiments and calls variant peptides as custom databases for proteogenomic library search.

moPepGen takes genomic and transcriptomic variants such as single nucleotide variants (SNPs or SNVs), small insertions/deletions (indels), gene fusion, alternative splicing, RNA circularization and RNA editing events, and generates noncanonical peptides affected by the variants.

Installation

Install from PyPI

pip install mopepgen

Install directly from GitHub

pip install git+ssh://git@github.com/uclahs-cds/package-moPepGen.git

Documentation

See here

Citation

  1. Zhu, C. et al. moPepGen: Rapid and Comprehensive Identification of Non-canonical Peptides. 2024.03.28.587261 Preprint at https://doi.org/10.1101/2024.03.28.587261 (2024).