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### DDA
| Process name | Link to quantms local module | Call | Tool|Test data | Test data (chunked)|
|-----|-----|-----|-----|-----|-----|
| cdecoy_pr | NA | [create_decoy](https://github.com/pr…
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Hi Vadim and community. I am playing around with the filtering the main report values. As part of this, I have been trying to reproduce the pg_matrix values I observe. When reproducing your filters as…
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Hello,
I am currently conducting single-cell proteomics experiments because our sample signals are much weaker compared to conventional DIA. I was wondering if DIA-NN has a similar way to adjust si…
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Relates to "per-host configuration" of Galaxy: https://github.com/galaxyproject/galaxy/pull/12328
**Galaxy Version and/or server at which you observed the bug**
Galaxy Version: 23.2.1.dev0 https:/…
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Hello Metaboverse team,
I am trying to run the metaboverse . I have my own metabolomics data and proteomics data which I formated as per the software. However, at around 17%, I get an error. I've t…
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Omics Type(s): metagenomes, metatranscriptomes, proteomics, NOM
Steps:
- [x] Add missing omics and biosample records - must be done before running **update-study**
[20240129.spruce_mt_fixes.json](ht…
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## Any comments on the following suggested change?
Currently, the enzyme usage reactions can be defined in two ways, dependent on whether proteomics data is integrated.
| Model content | Withou…
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```{yaml}
_LOGIN: pfeeder
_PASSWD: dcfxxf742aa459c2abb1095cc247dd49
_WEBBASE: https://fgcz-bfabric.uzh.ch/bfabric
applicationId:
Metabolomics/Analysis/ProgenesisQI: 226
Metabolomics/G2HD_1: …
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Hello,
Thanks for the work in the CPTAC!
I just came across an error.
I can't load the ucec bcm proteomics data with the following code
```
import cptac
ucec = cptac.Ucec()
ucec.get_proteomics(…
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- [x] Identify metadata components that need captured at PNNL (what isn't captured by DMS) (August)
- [ ] Identify metadata components captured by DMS that are required when data is received from o…