issues
search
microbiomedata
/
nmdc_automation
Prototype automation
3
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Adding examples of using JAWS client
#209
aclum
opened
14 hours ago
0
Skip downstream jobs for disabled workflows
#208
scanon
opened
19 hours ago
2
Add some tracing logic to help debug things
#207
scanon
opened
20 hours ago
0
Fix bug in range check
#206
scanon
closed
19 hours ago
0
MG Annotation v1.1.1
#205
kaijli
opened
1 day ago
0
188 fix type annotations in scheduler
#204
mbthornton-lbl
closed
15 hours ago
1
make sure we have a complete and single mapping file for napa re-iding for all 8 studies
#203
aclum
opened
1 week ago
0
ReadbasedAnalysis Version 1.0 (v1.0.7)
#202
vlilanl
opened
1 week ago
1
ID blade mismatch for metagenome_assembly_set records for (EMP500)
#201
aclum
opened
1 week ago
4
198 command to fix mal formed data paths and update data files
#200
mbthornton-lbl
closed
16 hours ago
0
Update workflows to latest versions
#199
scanon
opened
1 week ago
2
Command to fix mal-formed data paths and update data files
#198
mbthornton-lbl
closed
16 hours ago
1
Commands to find malformed workflow versions from re-ID and create update files for queries:run endpoint
#197
mbthornton-lbl
closed
6 days ago
1
ReadsQC shortReadsqc update (v1.0.10)
#196
vlilanl
opened
2 weeks ago
1
Implement MetaTranscriptomics Workflow
#195
mbthornton-lbl
opened
2 weeks ago
1
Diagram workflow automation system as built
#194
mbthornton-lbl
opened
2 weeks ago
0
Refactoring plan for workflow automation to Berkley schema
#193
mbthornton-lbl
opened
2 weeks ago
1
Add md5sum checks for data copied to results folder
#192
aclum
opened
2 weeks ago
0
mg_annotation update v1.1.0
#191
kaijli
opened
2 weeks ago
0
Implement JAWS API wrapper
#190
mbthornton-lbl
opened
2 weeks ago
0
metaAssembly output update (v1.0.5)
#189
vlilanl
opened
3 weeks ago
1
Fix type annotations in Scheduler
#188
mbthornton-lbl
opened
4 weeks ago
0
Napa reid data and logs
#187
mbthornton-lbl
opened
1 month ago
4
Commands to find mal-formed workflow version and to create updates for Database
#186
aclum
closed
6 days ago
6
Delete `coverage.xml` file and configure Git to ignore it
#185
eecavanna
closed
1 month ago
0
Delete `coverage.xml` file and add it to `.gitignore`
#184
eecavanna
closed
1 month ago
0
Delete redundant file (latest version is in `nmdc-aggregator` repo)
#183
eecavanna
closed
1 month ago
0
Update process_records command to not overwrite existing files
#182
mbthornton-lbl
closed
1 month ago
0
Remove workflow_iteration add functionality to get_new_nmdc_id
#181
mbthornton-lbl
closed
1 month ago
0
Delete `generate_functional_agg.py` if it is redundant
#180
eecavanna
closed
1 month ago
2
update get_updates_for_metabolomics_or_nom to append id_version
#179
aclum
closed
1 month ago
0
Run process-records on perlmutter for gold:Gs0114663 / nmdc:sty-11-aygzgv51
#178
mbthornton-lbl
closed
1 day ago
0
Bug workflow record iteration being set incorrectly by ReIDTool
#177
mbthornton-lbl
closed
1 month ago
1
Data QC: workflow_execution_has_input_data_objects
#176
mbthornton-lbl
opened
1 month ago
1
Update process-records command to not overwrite existing files
#175
mbthornton-lbl
closed
1 month ago
1
Update gold:Gs0128850 / nmdc:sty-11-076c9980 Wet Tropical Soils (metagenomes)
#174
mbthornton-lbl
closed
1 month ago
1
Update gold:Gs0110119 / nmdc:sty-11-zs2syx06 Angelo Coast Range Study (biosamples only)
#173
mbthornton-lbl
closed
1 month ago
1
Re-ID Studies for Prod
#172
mbthornton-lbl
closed
3 weeks ago
1
Update gold:Gs0135149 / nmdc:sty-11-dcqce727 Crested Butte (metagenomes, metatranscriptomes, NOM)
#171
mbthornton-lbl
closed
1 month ago
1
Update gold:Gs0114663 / nmdc:sty-11-aygzgv51 Riverbed sediment (metabolomics, metagenomes, NOM, proteomics)
#170
mbthornton-lbl
closed
1 month ago
2
Update gold:Gs0154244 / nmdc:sty-11-547rwq94 EMP (metagenomes)
#169
mbthornton-lbl
closed
1 month ago
1
Update gold:Gs0103573 / nmdc:sty-11-1t150432 Populus root microbiome (metagenomes)
#168
mbthornton-lbl
closed
1 month ago
1
Update gold:Gs0110138 / nmdc:sty-11-33fbta56 SPRUCE (metagenomes, NOM, proteomics, metatranscritpomes)
#167
mbthornton-lbl
closed
1 month ago
5
Update gold:Gs0114675 / nmdc:sty-11-8fb6t785 Deep subsurface shale (metagenomes)
#166
mbthornton-lbl
closed
1 month ago
3
162 workflow results are not incrementing correctly
#165
mbthornton-lbl
closed
1 month ago
0
163 bug functional annotation agg results not being deleted correctly in delete old records command
#164
mbthornton-lbl
closed
1 month ago
0
Bug functional annotation agg results not being deleted correctly in delete-old-records command
#163
mbthornton-lbl
closed
1 month ago
0
EMP500 re-id workflow results are not incrementing correctly - different blade + same version
#162
aclum
closed
1 month ago
5
160 bug extract records command failing workflow records not being written out
#161
mbthornton-lbl
closed
1 month ago
0
Bug: extract-records command failing workflow records not being written out
#160
mbthornton-lbl
closed
1 month ago
0
Next