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microbiomedata
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nmdc_automation
Prototype automation
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Scheduler fails Unable to find Assembly Contigs
#296
mbthornton-lbl
opened
1 day ago
0
293 skip metagenome sequencing
#295
mbthornton-lbl
closed
1 day ago
0
293 scheduler not handling nmdc:MetagenomeSequencing
#294
mbthornton-lbl
closed
1 day ago
1
Scheduler failing with ValueError
#293
mbthornton-lbl
closed
1 day ago
0
291 error initializing scheduler on spin
#292
mbthornton-lbl
closed
2 days ago
0
Error initializing Scheduler on Spin
#291
mbthornton-lbl
closed
2 days ago
0
Cache results of `allowed_workflows`
#290
mbthornton-lbl
closed
2 days ago
0
Watcher failing from stale filehandle
#289
mbthornton-lbl
closed
2 days ago
0
E2E Testing refactored Scheduler and Watcher
#288
mbthornton-lbl
opened
2 days ago
1
282 watcher running with nmdc dev configuration finds jobs but no data objects for the jobs
#287
mbthornton-lbl
closed
3 days ago
0
Increment metaAssembly version to v1.0.7
#286
vlilanl
closed
1 week ago
0
Added stats.json output for metaAssembly(v1.0.7)
#285
vlilanl
closed
1 week ago
0
283 added statsjson output for readsqc v1013
#284
mbthornton-lbl
closed
1 week ago
0
Added stats.json output for ReadsQC (v1.0.13)
#283
vlilanl
opened
2 weeks ago
1
Watcher running with nmdc-dev configuration finds jobs but no data objects for the jobs
#282
mbthornton-lbl
closed
3 days ago
3
Update import instructions in README.md
#281
aclum
closed
2 weeks ago
0
get_token errors when testing on dev
#280
aclum
opened
2 weeks ago
2
256 configure and deploy berkley rc1
#279
aclum
closed
2 weeks ago
0
Refactored Watcher overwriting state file with an empty file
#278
mbthornton-lbl
closed
2 weeks ago
0
KeyError: 'Workflows' from spin and nersc components
#277
kaijli
closed
3 weeks ago
3
MagsAnalysis import automation when no bins present
#276
aclum
opened
1 month ago
0
Watcher.watch not handling state file correctly
#275
mbthornton-lbl
closed
2 weeks ago
2
239 update import logic to update omicsprocessing record
#274
mbthornton-lbl
closed
3 weeks ago
3
Update ReadBasedAnalysis to version 1.0.8
#273
aclum
closed
3 weeks ago
0
252 workflow automation berkley rc1
#272
mbthornton-lbl
closed
1 month ago
0
265 inplement cromwell runner
#271
mbthornton-lbl
closed
1 month ago
1
add linkml validation to unit tests where nmdc-schema database records are made
#270
aclum
closed
19 hours ago
3
Update nmdc-schema to version 11.0.1
#269
aclum
closed
1 month ago
0
`berkeley` bump to nmdc-schema version 11.0.1
#268
aclum
closed
1 month ago
1
`berkeley` issue with DataObject records from import_automation
#267
aclum
closed
3 weeks ago
0
`berkeley` add data_category to workflow automation records
#266
aclum
opened
1 month ago
0
Inplement CromwellRunner
#265
mbthornton-lbl
closed
1 month ago
0
Update import-mt.yaml for berkeley schema
#264
aclum
closed
1 month ago
0
`berkeley` fix import configs
#263
aclum
closed
1 month ago
2
251 missing keys in workflow records
#262
mbthornton-lbl
closed
1 month ago
0
add tests for validating json records against nmdc-schema
#261
aclum
opened
1 month ago
1
import automation logic when import files don't have upstream records.
#260
aclum
opened
1 month ago
0
import automation generating mongo keys for which values are None or an empty list
#259
aclum
closed
3 weeks ago
1
254 update import automation to be compatible with berkeley metadata and endpoints
#258
aclum
closed
1 month ago
0
255 readsqc output update v1012
#257
aclum
closed
1 month ago
1
Configure and Deploy Berkley RC1
#256
mbthornton-lbl
closed
2 weeks ago
2
ReadsQC Output Update (v1.0.12)
#255
vlilanl
closed
1 month ago
2
Update `nmdc_automation.import_automation` to be compatible with Berkley metadata and endpoints
#254
mbthornton-lbl
closed
1 month ago
4
219 refactor workflow automation to use berkley metadata models
#253
mbthornton-lbl
closed
1 month ago
0
Workflow Automation Deploy Berkley RC1
#252
mbthornton-lbl
closed
1 month ago
1
Missing keys in activity records
#251
aclum
closed
1 month ago
2
Update MAGs version and output files
#250
aclum
closed
2 months ago
0
annotation update for JGI annotation 5.3
#249
aclum
opened
2 months ago
0
Updated MAGs input by adding crispr_file and removed legacy files
#248
vlilanl
closed
2 months ago
0
Update MAGs inputs
#247
kaijli
closed
2 months ago
0
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