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In ["Genomics Reveals Complex Population History and Unexpected Diversity of Eurasian Otters (Lutra lutra) in Britain Relative to Genetic Methods", du Plessis et al., 2023, `10.1093/molbev/msad207`](h…
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We want multiple test datasets to implement and test the population genomics features. Otter will be one of them, as we can refer to a publication that studies the population structure. We need at lea…
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Hello,
I have 2 10X Genomics datasets (BCR and GEX). What are the appropriate parameters setting for TRUST4?
I'm using
f"run-trust4 -1 {f1} -2 {f2} --barcode {f1} --UMI {f1} --readFormat bc:0:15,…
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##Branch
g1.02-studyExperiments
## Groups
Group 1 - Content Types | Ontology | Fields
## Describe
This issue provides the content types and fields expected for the Grassland Genomics gr…
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Hi Sam, its me again here.
Tried running the program again with TCGA samples, but unfortunately immediately ran into this new error.
When running the preprocessing, I realise that the tag direc…
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Running `DeepExplainer` example with genomics data results in following:
> TypeError Traceback (most recent call last)
> in ()
> 14 seqs_to_explain = onehot…
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Hi,
Thanks for developing such an excellent tool for single-cell genomics. I am wondering whether you could provide the processing pipeline for Easysci-ATAC-seq.
Thanks.
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### Description of the bug
I know it is still work in progress, but the new version of this pipeline `https://github.com/nf-core/rnavar/tree/dev` seems really promising. However, it only takes the fi…