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deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
BSD 3-Clause "New" or "Revised" License
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How to train deepvariant v1.6.1 on tpu?
#841
gambalab
opened
1 day ago
1
Follow up to issue 797
#840
helizabeth1103
opened
2 days ago
2
AttributeError issue
#839
hangy1
opened
2 days ago
5
Deepvariant genotype
#838
MKaandemir
opened
4 days ago
6
training on google engine
#837
gambalab
closed
3 days ago
2
Indel calling for long read sequencing
#836
may199128
opened
4 days ago
1
Cannot install latest DeepVariant via Conda
#835
lok27395
opened
1 week ago
3
run DeepVariant on ARM64
#834
0820LL
opened
1 week ago
1
Error encountered while running on downsampled BAM
#833
snakesch
closed
3 days ago
3
training with multi-gpu
#832
gambalab
closed
1 week ago
2
A timeout error occurs
#831
sunqiangzai
closed
18 hours ago
2
google/deepvariant:1.6.1 docker says version 1.6.0
#830
fellen31
opened
2 weeks ago
7
docker: invalid reference format.
#829
Jyoti-Mridha
closed
2 weeks ago
6
Use haplotagged bam file with WES model type
#828
eaooms
closed
2 weeks ago
6
any progress on somatic SNV calling?
#827
proukakis
closed
2 weeks ago
1
gvcf with true depth and not (only) min_dp
#826
ESDeutekom
closed
2 weeks ago
5
Fix male VCF after calling without --haploid_contigs="chrX,chrY" and/or --par_regions_bed parameters
#825
NourMarzouka
closed
2 weeks ago
2
Homozygous GT value while IGV shows otherwise
#824
asalimih
opened
1 month ago
8
Error while using deepvariant with a bam file that is phased
#823
eaooms
closed
1 month ago
4
error while running deepvariant with a bam file with phasing information
#822
eaooms
closed
1 month ago
0
Info ONT R10.4.1 data
#821
gambalab
closed
1 month ago
3
CUDA_ERROR_NO_DEVICE: no CUDA-capable device is detected
#820
kunmonster
closed
2 weeks ago
9
Issues with Incompatible TensorRT libraries in docker image google/deepvariant:latest-gpu and google/deepvariant:1.6.1-gpu
#819
nlopez94
closed
1 month ago
9
postprocess_variants: Found multiple file patterns in input filename space
#818
MiWitt
closed
2 weeks ago
8
[E::vcf_parse_format] Incorrect number of FORMAT fields at NC_059157.1:24900
#817
ilalab
closed
1 month ago
2
haploid contigs and PAR region options for DeepTrio
#816
prasundutta87
closed
1 month ago
13
Merging vcf files error with glnexus:v1.2.7
#815
poddarharsh15
closed
1 month ago
6
Question about the time it takes for VC analysis
#814
bkurtoglu
closed
1 month ago
5
question for INDEL variant calling
#813
sophienguyen01
closed
1 month ago
14
Dynamic cast failed
#812
Carl-labhub
closed
1 month ago
6
Merging gvcf with GLnexus introduces non-zero heterozygous PL in hemizygous PAR
#811
ASLeonard
opened
2 months ago
1
Output files are missing after running deepvariant.
#810
githubtefo
closed
1 month ago
10
Highest mapping quality = 42 in bowtie2
#809
Wenfei-Xian
closed
2 months ago
3
How to get list of variants after make_examples step?
#808
sophienguyen01
closed
2 months ago
1
Fatal Python error: Segmentation fault
#807
navishkumarb
closed
2 months ago
3
unable to run deepvariant using conda
#806
Zer0day-0
closed
2 months ago
6
Question about training
#805
gambalab
closed
2 months ago
1
BrokenPipeErro during postprocess_variants
#804
LogCrab
closed
1 month ago
8
Restarting from post process variants step of deeptrio
#803
gevro
closed
2 months ago
4
error in training DeepVariant
#802
sophienguyen01
closed
2 months ago
13
I am confusion about your deep learning architecture.
#801
pioneer-pi
closed
2 months ago
3
How to set threshold to filter vcf files
#800
Tonitsk8264
closed
2 months ago
2
Missing --gpus flag in deeptrio
#799
gevro
closed
3 months ago
1
Error about expected cur_seq.size() < Max_READ_LEN
#798
OZTaekOppa
closed
2 months ago
2
Issue testing custom model
#797
helizabeth1103
closed
2 months ago
10
How to merge Pacbio gvcfs?
#796
rabbitdsy
closed
2 months ago
2
Singularity import issue and possible solution
#795
YuheCheng62
closed
2 months ago
2
Fatal Python error: Segmentation fault
#794
baozg
closed
2 months ago
12
Shuffle script not compatible with versions of tensorflow packages?
#793
helizabeth1103
closed
3 months ago
4
Developers notes / environment for modifying code
#792
rickymagner
closed
3 months ago
4
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