BGI-shenzhen PopLDdecay issues

BGI-shenzhen / PopLDdecay

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

MIT License

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issues

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Plot_MultiPop.pl（Error: object 'ECH' not found）

#21 huang-baisha closed 1 month ago
2
Structure Variation

#20 lunky-zao opened 11 months ago
1
LD error

#19 cfz1998 closed 1 year ago
1
Process with very long chromosomes

#18 ChenJuiYANG closed 1 year ago
2
Confidence intervals

#17 Homap opened 1 year ago
4
When using PopLDdecaly, it will be prompted with “command option error! please check”

#16 gqf520 opened 1 year ago
1
How to get the distance and r2 value where the LD decay?

#15 DuttaAnik closed 2 years ago
2
Questions about the "-MAF 0.05" parameter

#14 scau-drr closed 2 years ago
1
Zlib incompatibility

#13 AldenInversion closed 2 years ago
1
Error in the plot codes

#12 jiabowang closed 2 years ago
1
Segment fault

#11 LiuYuHui closed 3 years ago
2
How the calculated the decay line by nonlinear regression to the LD plot?

#10 sekhwal opened 3 years ago
3
VCF file example

#9 NurislamSheih closed 3 years ago
2
How are the distance bins computed

#8 Carol-Symbiomics closed 3 years ago
1
Can PopLDdecay use vcf of bacteria as input?

#7 Xiaojun928 closed 3 years ago
3
RAM Usage and other

#6 GabrieleNocchi opened 4 years ago
2
Singularity container

#5 jlboat opened 5 years ago
0
EHH instructions not clear

#4 sergiopalmavera closed 3 years ago
1
VCF format issue

#3 harry-thorpe closed 5 years ago
2
Haploview is refered in the manuscript

#2 nottwy closed 5 years ago
4
Fail to install when make file

#1 Yiguan closed 6 years ago
5