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Hi Billy -
Before I started running the pipeline, I made my `cohort.yaml` file in the format of the tutorial, and [now] successfully ran `process_smrtcells` and `process_samples` (yay - many thanks…
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Hello,
I have an issue that seems related to the above. I'm working with binary phenotypes, so I've inputted them as shown above where for each individual, there's an ICD10 code if the patient has …
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Hi expert,
Recently, I wanted to compute the correlation between genotype (i.e. 0/1/2 corresponding to AA/AB/BB) and other clinical phenotypes from UKB. I used the following command line to run this …
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Hi,
I get the warnning with the Options as following:
_________________________________________________________________________________
Options in effect:
--step 1 \
--force-step1 \
--…
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Discussion on how to construct meta titles and descriptions:
https://docs.google.com/document/d/1R8ocUllm8EV3SPd5XBkY1rIC8sZgYVV1A93dsA7QujQ/edit#heading=h.kh7oxyc39a8c
DoD:
1. Add tissue descriptio…
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Minor issue.
v3.1.2
--sex-specific works if you specify it just in step 1 and not step 2.
if you specifiy --sex-specific for both step 1 and step 2, doesnt work.
Suggest either mention thi…
dvh13 updated
2 years ago
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Thank you for your answer
I don't quite understand what you mean about "count",for example,I have some data(
100 | D259 | F171 | H251| N840 | N950 | Z016 |
101 | R410 | R55 |
102 | D24 | K112 | …
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Hi,
Some GWAS tools like plink2 recommend running with multiple phenotypes at once rather than multiple runs of single phenotypes.
> If you have multiple quantitative phenotypes with either no missi…
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> Kannst Du Dir im Frontend ein Formular zur Spezifikation von Abfragen vorstellen mit folgenden Feldern: Age, Gender, Inclusion, Exclusion und Projection (vielleicht noch ein Paar andere Sachen, wie …
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Hello,
I am using the PheWAS package to compare phenotypes in people with and without sex chromosome aneuploidies. I used the createPhewasTable function to reshape the data into wide format, with o…