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prefetch some some files failed but not others
For exmaple:
`prefetch SRR8231713` failed
```
2019-08-30T02:21:23 prefetch.2.9.6: heartbeat = 60000 Milliseconds
2019-08-30T02:21:23 prefetch.2.9.…
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Hi,
I met this problem when I used grabseqs.
Traceback (most recent call last):
F…
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Since NCBI updated their tool suite, RMTA no longer works on SRA IDs. This will likely work with an update to HiSat2.
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associated with: http://ivory.idyll.org/blog/2017-sourmash-sra-microbial-wgs.html
see https://github.com/dib-lab/soursigs/blob/3db6162579e0efbc4fe8f181a7f08c3aee391d97/Snakefile#L149
```
http:/…
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Hello -- thank you for making `reutils`, this package is very convenient for data mining from NCBI databases. However, I have noticed some error in the latest version. Here is what I tried:
```
ac…
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**Environment:**
- Platform: OPS Orange Cloud
- Configuration: OPS
- Infrastructure v1.5.0
- RS add-on S3-SR1-NRT 1.13.1-rc1
- RS add-on S3-SR1-NTC 1.13.1-rc1
**Traceability:**
- Test(s):
- Require…
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Hello, I have tried these commands many times but it did not succeed.
```
fastq-dump --split-files --gzip SRR622457
fastq-dump --split-files --gzip SRR622458
fastq-dump --split-files --gzip SRR6…
NamLQ updated
4 years ago
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When I create a table of values for some signal in the .DBC editor, the generated code looks like this:
```c_cpp
/* Signal choices. */
#define SRADB_SRA_PACKET_SYMBOL_TYPE_ERR_CHOICE (0u)
#define …
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## Describe the bug
DataFrame dimension mismatch error using data from project SRP017465
```
rse_expanded
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Examples:
-srr srr000218, srr000219
-srp srp000323