issues
search
kbaseattic
/
assembly
An extensible framework for genome assembly.
MIT License
12
stars
14
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add CodeQL workflow for GitHub code scanning
#328
lgtm-com[bot]
opened
1 year ago
0
Fix a potential wrong operator bug
#327
LostBenjamin
opened
2 years ago
0
Update master
#326
levinas
closed
7 years ago
0
Update dev
#325
levinas
closed
7 years ago
0
Add retry
#324
olsonanl
closed
7 years ago
1
Compute Node: If min_free_space cannot be met via GC, node hangs
#323
cbun
opened
7 years ago
0
Add plasmid assembly plugin and recipe
#322
levinas
closed
8 years ago
0
[FIX] Disable velvet scaffolding by default
#321
cbun
closed
8 years ago
0
Merge staging to master
#320
kkellerlbl
closed
8 years ago
1
fix bug in bwa/masurca
#319
levinas
closed
8 years ago
0
next update
#318
levinas
closed
8 years ago
0
KBase image
#317
jjkoehorst
opened
8 years ago
0
PacBio assembler and other updates
#316
levinas
closed
8 years ago
0
deploy module_bin
#315
levinas
closed
8 years ago
0
Compute node support multiple queues
#314
cbun
closed
8 years ago
0
Contig support
#313
cbun
closed
8 years ago
1
check if we need to add the facheck step for the reapr plugin
#312
levinas
opened
9 years ago
0
ImportError: No module named packages.urllib3.poolmanager
#311
cbun
opened
9 years ago
1
shock-client: throw an exception if shock service is down
#310
sebhtml
closed
9 years ago
1
Dev
#309
sebhtml
closed
9 years ago
3
Dev
#308
sebhtml
closed
9 years ago
5
improved logging and plugins
#307
levinas
closed
9 years ago
0
add validation on input read length for assemblies involving IDBA
#306
brettin
opened
9 years ago
0
fix incoherency about running jobs in various pieces
#305
sebhtml
opened
9 years ago
2
Fix plugin to deal with SPAdes core dumps
#304
levinas
opened
9 years ago
1
GC fixes and log refactoring
#303
levinas
closed
9 years ago
0
Fasta files and Auto recipe compatibility
#302
cbun
closed
9 years ago
0
velvet in auto recipe does not recognize FASTA files
#301
levinas
closed
9 years ago
4
Ensure index on user and jobid
#300
cbun
closed
9 years ago
6
mongodb sort error
#299
levinas
closed
9 years ago
5
storage: remove unused variable
#298
sebhtml
closed
9 years ago
1
upload: use toolbelt also for unauthenticated transfers
#297
sebhtml
closed
9 years ago
2
object storage: fix memory usage issue and hangs
#296
sebhtml
closed
9 years ago
1
Store arbitrary plugin output, plugin manager bugfix
#295
cbun
closed
9 years ago
2
Incorporate MEGAHIT into recipes and human readable command logging for subcommands
#294
levinas
closed
9 years ago
0
improve arast_score
#293
levinas
opened
9 years ago
0
add a module for joining overlapping reads
#292
levinas
opened
9 years ago
3
support caching for previously computed datasets
#291
levinas
opened
9 years ago
1
Dev
#290
sebhtml
closed
9 years ago
6
Dev recipes
#289
sebhtml
closed
9 years ago
0
tools: add megahit package
#288
sebhtml
closed
9 years ago
0
Dev
#287
sebhtml
closed
9 years ago
0
update ar-filter to remove Phi X contig
#286
levinas
opened
9 years ago
0
Dev
#285
sebhtml
closed
9 years ago
0
Add spate and update SPAdes
#284
levinas
closed
9 years ago
1
capture basic performance data from jobs
#283
levinas
opened
9 years ago
6
integrate spate plugin
#282
levinas
closed
9 years ago
1
fix velvet bug in parsing mixed interleaved/separate libraries
#281
levinas
closed
9 years ago
1
Spate plugin
#280
sebhtml
closed
9 years ago
1
resolve issue with GC deadlock
#279
levinas
closed
9 years ago
0
Next