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I have been looking into using the RNA-seq data but have some questions on the gene annotations for the V2-RNA-seq data that I get from running your GDC-prepare-function.
How do the 21022 genes tha…
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I've been reviewing the survival code in the vignette and would like to download `*_rnaseqv2` and `dataDEGsFiltLevel` datasets for another project. Have you considered adding the code you used to ge…
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Hi! Thanks for developing CBNplot! I just want reproduce the documentation of CBNplot, but some codes cannot running successfully in Win10. By the way, could you share the file, _tcgablcaData.rda_? or…
Ci-TJ updated
2 years ago
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Hi:
I want to use TCGAbiolinks to analyze COAD expression data. Here is what I did.
```r
#Query platform Illunmina hiSeq with a list of barcode
query_Data
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The vignette allows integration of mRNA expression and methylation data. Can a similar strategy be employed for miRNA expression and methylation integration????
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# question
Hi @smorabit ,thanks for your convenient tool! After `PlotKMEs`, I wonder whether the gene symbols on the right side are in the opposite order compared with the original hub_df? In my opin…
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When I try to use promoterMeth using different MAE, I get this error:
```R
data(elmer.data.example.promoter)
Gene.promoter
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> The downloaded source packages are in
> ‘/common/tmp/RtmplmKhxH/downloaded_packages’
>Warning message:
>package ‘TCGAWorkflow’ is not available (for R version 3.4.4)
>The downloaded source pac…
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Hello,
I've downloaded the RNA data and I'd like to match the clinical data to it. However, I'm unsure about how to match the datasets using unique IDs. I see that they both have bcr_patient_barcod…
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Hi,
I am using "evaluate_check_ancestry" functions with the data files provided in extdata by plinkQC and my data as well.
In both cases, I am getting the error:
Error in seq_len(n) : argument must…
boseb updated
2 years ago