smorabit hdWGCNA issues

smorabit / hdWGCNA

High dimensional weighted gene co-expression network analysis

https://smorabit.github.io/hdWGCNA/

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'Error in EnrichrBarPlot(... : object 'dbs' not found'

#337 stephanieRedmond opened 3 hours ago
0
hdWGCNA (found a mistake in this code)

#336 GudaLab opened 5 days ago
0
Error in utils::download.file(url, path, method = method, quiet = quiet, : download from 'https://api.github.com/repos/smorabit/hdWGCNA/tarball/dev' failed

#335 Sara-Tavallaei closed 1 week ago
2
Question about [my question]Error in !CheckWGCNAName(seurat_obj, wgcna_name) : invalid argument type

#334 RGT183 opened 1 week ago
2
Question about multiple spatial samples

#333 atrostleSW opened 1 week ago
4
Question about dendrogram plot

#332 laterz-f opened 1 week ago
1
Question about proportion of genes assigned to grey module

#331 ddressman91 opened 1 week ago
1
Analysis of changes in co-expression patterns

#330 amingson opened 2 weeks ago
2
github installation broken?

#329 philippstb opened 2 weeks ago
3
Error in if (!(multi.group.by %in% names(seurat_obj@meta.data))) { : argument is of length zero

#328 xiaoli-gg closed 2 weeks ago
9
Error in ConstructPseudobulk (argument is not a matrix) when I don't specify label_col

#327 ddressman91 opened 3 weeks ago
2
Error in ConstructTFNetwork(seurat, model_params) : gene_name column missing in motif table (GetMotifs(seurat_obj)). Please add a column indicating the gene_name in the seurat_obj for each motif.

#325 dimitrisokolowskei closed 3 weeks ago
2
Error in if (!check) when running Enrichr enrichment analysis

#324 jijjigae closed 3 weeks ago
9
Subscript out of bounds error using ModuleConnectivity

#323 mrendleman closed 1 month ago
1
PlotModuleTraitCorrelation for one trait

#322 shiave opened 1 month ago
1
Error in ConstructTFNetwork(seurat_obj) : argument "model_params" is missing, with no default

#321 come-on-j closed 3 weeks ago
1
Could not find function ConstructPseudobulk: has it been removed?

#320 ExctOcean closed 1 month ago
2
`ConstructMetaspots`: `seurat_obj` not found

#319 ppm1337 closed 3 weeks ago
1
Invalid selection for mods

#318 Li-ZhiD closed 3 weeks ago
6
MetaspotsByGroups ERROR: invalid class “Assay5” object: Layers must be two-dimensional objects

#317 dylanwudy opened 1 month ago
1
Is there a way to perform Differential ME analysis using two independent seurat objects?

#316 ozambadam closed 1 month ago
3
maybe wrong hub genes orders in PlotKMEs

#315 rocketeer1998 opened 1 month ago
1
MetaspotsByGroups: 'data' must be of a vector type, was 'NULL'

#314 Li-ZhiD closed 1 month ago
4
"Error in if (!check) { : argument is of length zero" for metacell construction

#313 shiave closed 1 month ago
2
Update PlotDMEsVolcano

#312 rootze closed 2 months ago
0
PlotDMEsVolcano Green Module missing in plot: Removed 1 row containing missing values or values outside the scale range

#311 rootze closed 2 months ago
2
Question about the possibility of using external metacell asssignment

#310 pmandros opened 2 months ago
2
RNA assay in seurat object for hdWGCNA, should l removeintegrated assay?

#309 yulchen810 closed 1 month ago
1
cannot install hdWGCNA package in R

#308 yulchen810 closed 1 month ago
3
apply for Integrated single-nucleus RNA sequencing

#307 XiaoyanWang11 closed 1 month ago
2
Co-expression module dynamics with pseudotime cannot run the module dynamics graphs

#306 CamiCalamity opened 2 months ago
1
undefined arguments in blockwiseConsensusModules

#305 Bisho2122 closed 1 month ago
3
Question about PlotDMEsLollipop

#304 junghpark closed 1 month ago
1
Error in Tutorial Test

#303 YunzeZhang19 closed 3 months ago
1
Installation Problem

#302 LisaBlackmer closed 3 months ago
3
How to use MetacellsByGroups?

#301 zznx closed 3 months ago
6
`MetacellsByGroups`

#300 zznx closed 3 months ago
1
ModuleNetworkPlot

#299 dorothyzh closed 4 months ago
1
NormalizeMetacells

#298 zznx closed 4 months ago
8
Annotations for Visium 10x data in spatial vignette

#297 sandcell10 closed 3 months ago
1
no applicable method for 'JoinLayers' applied to an object of class "c('Assay', 'KeyMixin')

#296 DLY-2021 opened 4 months ago
4
Error in ProjectModuleNames(): No genes found

#295 YenTrangHoang closed 4 months ago
3
Error in !CheckWGCNAName(seurat_obj, wgcna_name) : invalid argument type

#294 Sara-Tavallaei closed 4 months ago
2
ModuleRadarPlot

#293 joe-jhou2 closed 3 months ago
2
HdWGCNA for single Cell ATACseq

#292 feanaros closed 1 month ago
1
Error in motifscan hdwgcna

#291 nitinsai1 closed 1 month ago
1
MetacellsByGroups -> "Error in apply(cell_sample, 1, function(x) { : dim(X) must have a positive length"

#290 MJD-BlanckGroup opened 4 months ago
5
SetupForWGCNA: Error in cur[cur > 0] <- 1 : object of type 'S4' is not subsettable

#289 Dazcam closed 4 months ago
2
Does it make sense to compare two levels of a variable (with 4 level) in one level of another variable(with two levels) using DME

#288 pariaaliour closed 1 month ago
3
Error in checkSets(MEs, checkStructure = TRUE, useSets = useSets) : No data given.

#287 Dazcam closed 1 month ago
1