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smorabit
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hdWGCNA
High dimensional weighted gene co-expression network analysis
https://smorabit.github.io/hdWGCNA/
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'Error in EnrichrBarPlot(... : object 'dbs' not found'
#337
stephanieRedmond
opened
3 hours ago
0
hdWGCNA (found a mistake in this code)
#336
GudaLab
opened
5 days ago
0
Error in utils::download.file(url, path, method = method, quiet = quiet, : download from 'https://api.github.com/repos/smorabit/hdWGCNA/tarball/dev' failed
#335
Sara-Tavallaei
closed
1 week ago
2
Question about [my question]Error in !CheckWGCNAName(seurat_obj, wgcna_name) : invalid argument type
#334
RGT183
opened
1 week ago
2
Question about multiple spatial samples
#333
atrostleSW
opened
1 week ago
4
Question about dendrogram plot
#332
laterz-f
opened
1 week ago
1
Question about proportion of genes assigned to grey module
#331
ddressman91
opened
1 week ago
1
Analysis of changes in co-expression patterns
#330
amingson
opened
2 weeks ago
2
github installation broken?
#329
philippstb
opened
2 weeks ago
3
Error in if (!(multi.group.by %in% names(seurat_obj@meta.data))) { : argument is of length zero
#328
xiaoli-gg
closed
2 weeks ago
9
Error in ConstructPseudobulk (argument is not a matrix) when I don't specify label_col
#327
ddressman91
opened
3 weeks ago
2
Error in ConstructTFNetwork(seurat, model_params) : gene_name column missing in motif table (GetMotifs(seurat_obj)). Please add a column indicating the gene_name in the seurat_obj for each motif.
#325
dimitrisokolowskei
closed
3 weeks ago
2
Error in if (!check) when running Enrichr enrichment analysis
#324
jijjigae
closed
3 weeks ago
9
Subscript out of bounds error using ModuleConnectivity
#323
mrendleman
closed
1 month ago
1
PlotModuleTraitCorrelation for one trait
#322
shiave
opened
1 month ago
1
Error in ConstructTFNetwork(seurat_obj) : argument "model_params" is missing, with no default
#321
come-on-j
closed
3 weeks ago
1
Could not find function ConstructPseudobulk: has it been removed?
#320
ExctOcean
closed
1 month ago
2
`ConstructMetaspots`: `seurat_obj` not found
#319
ppm1337
closed
3 weeks ago
1
Invalid selection for mods
#318
Li-ZhiD
closed
3 weeks ago
6
MetaspotsByGroups ERROR: invalid class “Assay5” object: Layers must be two-dimensional objects
#317
dylanwudy
opened
1 month ago
1
Is there a way to perform Differential ME analysis using two independent seurat objects?
#316
ozambadam
closed
1 month ago
3
maybe wrong hub genes orders in PlotKMEs
#315
rocketeer1998
opened
1 month ago
1
MetaspotsByGroups: 'data' must be of a vector type, was 'NULL'
#314
Li-ZhiD
closed
1 month ago
4
"Error in if (!check) { : argument is of length zero" for metacell construction
#313
shiave
closed
1 month ago
2
Update PlotDMEsVolcano
#312
rootze
closed
2 months ago
0
PlotDMEsVolcano Green Module missing in plot: Removed 1 row containing missing values or values outside the scale range
#311
rootze
closed
2 months ago
2
Question about the possibility of using external metacell asssignment
#310
pmandros
opened
2 months ago
2
RNA assay in seurat object for hdWGCNA, should l removeintegrated assay?
#309
yulchen810
closed
1 month ago
1
cannot install hdWGCNA package in R
#308
yulchen810
closed
1 month ago
3
apply for Integrated single-nucleus RNA sequencing
#307
XiaoyanWang11
closed
1 month ago
2
Co-expression module dynamics with pseudotime cannot run the module dynamics graphs
#306
CamiCalamity
opened
2 months ago
1
undefined arguments in blockwiseConsensusModules
#305
Bisho2122
closed
1 month ago
3
Question about PlotDMEsLollipop
#304
junghpark
closed
1 month ago
1
Error in Tutorial Test
#303
YunzeZhang19
closed
3 months ago
1
Installation Problem
#302
LisaBlackmer
closed
3 months ago
3
How to use MetacellsByGroups?
#301
zznx
closed
3 months ago
6
`MetacellsByGroups`
#300
zznx
closed
3 months ago
1
ModuleNetworkPlot
#299
dorothyzh
closed
4 months ago
1
NormalizeMetacells
#298
zznx
closed
4 months ago
8
Annotations for Visium 10x data in spatial vignette
#297
sandcell10
closed
3 months ago
1
no applicable method for 'JoinLayers' applied to an object of class "c('Assay', 'KeyMixin')
#296
DLY-2021
opened
4 months ago
4
Error in ProjectModuleNames(): No genes found
#295
YenTrangHoang
closed
4 months ago
3
Error in !CheckWGCNAName(seurat_obj, wgcna_name) : invalid argument type
#294
Sara-Tavallaei
closed
4 months ago
2
ModuleRadarPlot
#293
joe-jhou2
closed
3 months ago
2
HdWGCNA for single Cell ATACseq
#292
feanaros
closed
1 month ago
1
Error in motifscan hdwgcna
#291
nitinsai1
closed
1 month ago
1
MetacellsByGroups -> "Error in apply(cell_sample, 1, function(x) { : dim(X) must have a positive length"
#290
MJD-BlanckGroup
opened
4 months ago
5
SetupForWGCNA: Error in cur[cur > 0] <- 1 : object of type 'S4' is not subsettable
#289
Dazcam
closed
4 months ago
2
Does it make sense to compare two levels of a variable (with 4 level) in one level of another variable(with two levels) using DME
#288
pariaaliour
closed
1 month ago
3
Error in checkSets(MEs, checkStructure = TRUE, useSets = useSets) : No data given.
#287
Dazcam
closed
1 month ago
1
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