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smorabit
/
hdWGCNA
High dimensional weighted gene co-expression network analysis
https://smorabit.github.io/hdWGCNA/
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Error by using MetaspotsByGroups
#59
JoyOtten
closed
1 year ago
14
Error with ModuleUMAPPlot function in hdWGCNA
#186
venkan
closed
1 month ago
12
Error during PlotDMEsLollipop
#134
kaizen89
closed
8 months ago
11
Using module_trait_correlation to identify gene modules associated with specific disease states.
#242
Li-mengjie
closed
2 weeks ago
10
No cell names (colnames) names present in the input matrix
#138
olive-yelloweyes
closed
9 months ago
10
Error running SCTransform
#55
ChristinaSteyn
closed
1 year ago
10
When I used the "metacellsbygroup" function, I found an error.
#46
zh1221
closed
1 year ago
10
ConstructNetwork temp .rda file location
#182
DelongZHOU
opened
5 months ago
9
could not find function "ConstructPseudobulk"
#181
venkan
closed
5 months ago
9
Supplying a named list to rename all modules doesn't work
#132
iamakhilverma
closed
8 months ago
9
Module and trait
#89
maqingyue
closed
1 year ago
9
Are you planning on upgradding hdWGCNA to work with Seurat V5 in the near future?
#174
ozambadam
closed
2 months ago
8
How to repel labels in ModuleUMAPPlot()
#18
levinhein
closed
2 months ago
8
Error with MetaspotsByGroups
#179
Prakrithi-P
closed
5 months ago
7
seurat_obj <- ModuleEigengenes( seurat_obj, assay = "RNA", use_layer = "data", verbose = FALSE ) Error in ModuleEigengenes(seurat_obj, assay = "RNA", use_layer = "data", : "data"槽名不存在于"Assay5"类别对象中
#177
rraky
closed
5 months ago
7
MetacellsByGroups function, I get an error
#100
cccccdoinb
closed
1 year ago
7
Error with MetaspotsbyGroups min_spots function
#63
JoyOtten
closed
1 year ago
7
all module genes have negative kME values
#10
hongsilv
closed
1 year ago
7
"Error: 'RNA' is not an assay" in SetDatExpr
#221
learning-MD
closed
2 months ago
6
Question about color of modules in volcano plots
#194
DelongZHOU
opened
4 months ago
6
Error in get.knn(data, k, algorithm) : Data non-numeric
#133
Thapeachydude
closed
9 months ago
6
hdWGCNA Installation error
#131
madhubioinformatics
closed
9 months ago
6
Error in blockwiseIndividualTOMs
#111
yt723
closed
12 months ago
6
error with the SetDatExpr function
#64
zftu
closed
1 year ago
6
Error in ModuleEigengenes
#14
wk-chan
closed
1 year ago
6
Error in irlba(A = t(x = object), nv = npcs, ...)
#9
umranyaman
closed
1 year ago
6
SetupForWGCNA: invalid number of intervals
#6
KoichiHashikawa
closed
2 years ago
6
Removing anti-correlated genes from module
#241
mitchTwoTimes
closed
2 weeks ago
5
Error in ModuleEigengenes
#231
C1165511708
closed
2 months ago
5
ModuleNetworkPlot for small networks
#230
DelongZHOU
closed
2 months ago
5
Old links to description of statistics for module preservation
#185
Dimmiso
opened
5 months ago
5
Issue Creating Metacells
#168
Sandman-1
closed
1 month ago
5
Error in TestSoftPowers()
#105
Prakrithi-P
closed
1 year ago
5
ncRNA-gene co-expression
#104
Prakrithi-P
closed
1 year ago
5
MotifScan run failed with an error
#73
RajneeshSrivastava
closed
1 year ago
5
error in ModuleEigengenes function
#39
nfancy
closed
1 year ago
5
number of metacells created far larger than expected
#27
Brawni
closed
1 year ago
5
Question about pct.1 and pct.2 from FindDMEs
#259
DelongZHOU
closed
1 week ago
4
Question about interpreting kME
#256
DelongZHOU
closed
2 weeks ago
4
Error duing ModulePreservation "Error in multiColor[[s]] : subscript out of bounds"
#235
DelongZHOU
closed
1 month ago
4
Question about exporting the networks to Metascape
#223
DelongZHOU
opened
2 months ago
4
Question about module preservation with bulk RNA-seq dataset
#222
zitiansunshine
closed
1 month ago
4
Question about low cell count groups
#218
DelongZHOU
closed
2 months ago
4
Enrichr filtering & background
#193
DelongZHOU
opened
4 months ago
4
Error while plotting dendrogram & module color bar is missing
#164
Dimmiso
closed
5 months ago
4
how to interpret distance and inter / intra connectivity in HubGeneNetworkPlot
#162
behyag
closed
7 months ago
4
MetacellsByGroups group.by argument
#151
behyag
closed
7 months ago
4
Question about genes with zero standard deviation in ConstructNetwork()
#141
sahanda66
closed
8 months ago
4
The tutorial codes cannot be run (TestSoftPowers)
#130
chiwwong
closed
9 months ago
4
MetacellsByGroups Error + Pipeline questions
#128
maithermbarros
closed
8 months ago
4
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