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smorabit
/
hdWGCNA
High dimensional weighted gene co-expression network analysis
https://smorabit.github.io/hdWGCNA/
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Redundent assignment of genes to modules
#213
Dimmiso
closed
2 months ago
2
Assigning genes to modules based on Metacells, not cells?
#212
Dimmiso
closed
2 months ago
2
Error with PlotModuleTrajectory function
#211
kasumaz
closed
3 months ago
2
Error of SetDatExpr: wgcna_genes obtained from SetupForWGCNA contains "NA"
#210
yizhang-zoey
closed
1 month ago
2
Subset dataset to cell type before constructing metacells
#209
mitchTwoTimes
closed
2 months ago
1
Error in the ModulePreservation step
#208
loganminhdang
closed
2 months ago
2
co-expression network analysis on more than one cluster simultaneously
#207
naiem-99
closed
2 months ago
3
20681 Segmentation fault while installing hdWGCNA
#206
anbarasu02
closed
2 months ago
2
Zhou dataset not available
#205
dimitrisokolowskei
closed
3 months ago
2
ModuleEigengenes exclude_grey not working
#204
iichelhadi
closed
3 months ago
1
Adding dims parameter to `MetacellsByGroups`
#203
samuel-marsh
closed
2 months ago
2
Add corSparse Internally (qlcMatrix archived from CRAN)
#202
samuel-marsh
closed
3 months ago
0
Can't pass parameter wgcna_name to TestSoftPowers
#201
yizhang-zoey
closed
3 months ago
1
Warning when using ModuleEigengenes
#200
yizhang-zoey
closed
3 months ago
1
How to set a threshold for Kmes in hub genes
#199
yamihn
closed
3 months ago
2
How do I choose some modules for HubGeneNetworkPlot plotting
#198
DelongZHOU
closed
2 months ago
1
SetDatExpr: Error in if (!(multi.group.by %in% names(seurat_obj@meta.data))) { : argument is of length zero
#197
18876960318
closed
2 months ago
2
Question about the best pipeline of hdWGCNA for single-cell data analysis
#196
yizhang-zoey
closed
3 months ago
1
Question about module preservation / reproducibility when creating the modules
#195
DelongZHOU
opened
4 months ago
1
Question about color of modules in volcano plots
#194
DelongZHOU
opened
4 months ago
6
Enrichr filtering & background
#193
DelongZHOU
opened
4 months ago
4
"RunPCAMetaCells" function in the Seurat Wrapper of the "Optional: Process the MetaCell Seurat Object" step of single-cell dataset vignette doesn't run
#192
kevynjackson
closed
3 months ago
3
No Tags
#191
jowodo
closed
4 months ago
2
Drawing problem about hdWGCNA
#190
rraky
closed
4 months ago
1
Load a previously generated TOM into a seurat object via the TOM.rda file?
#189
rdalbanus
closed
5 months ago
3
Question about [SetDatExpr() error]
#188
lisp-0326
closed
5 months ago
1
How to get the adjacency matrix using hdWGCNA?
#187
venkan
closed
5 months ago
2
Error with ModuleUMAPPlot function in hdWGCNA
#186
venkan
closed
1 month ago
12
Old links to description of statistics for module preservation
#185
Dimmiso
opened
5 months ago
5
EnrichrBarPlot bar / text color
#184
DelongZHOU
closed
4 months ago
1
Requirements ggforestplot and ggrepel not specified
#183
DelongZHOU
closed
5 months ago
1
ConstructNetwork temp .rda file location
#182
DelongZHOU
opened
5 months ago
9
could not find function "ConstructPseudobulk"
#181
venkan
closed
5 months ago
9
Question about network construction strategies
#180
YenTrangHoang
closed
5 months ago
1
Error with MetaspotsByGroups
#179
Prakrithi-P
closed
5 months ago
7
SetDataExpr Error
#178
vasikara17
closed
5 months ago
1
seurat_obj <- ModuleEigengenes( seurat_obj, assay = "RNA", use_layer = "data", verbose = FALSE ) Error in ModuleEigengenes(seurat_obj, assay = "RNA", use_layer = "data", : "data"槽名不存在于"Assay5"类别对象中
#177
rraky
closed
5 months ago
7
but FUN(X[[2]]) result is length 0
#176
Tycooner
closed
4 months ago
2
How to specify species as rat in EnrichR analysis
#175
Ldec12
closed
4 months ago
2
Are you planning on upgradding hdWGCNA to work with Seurat V5 in the near future?
#174
ozambadam
closed
2 months ago
8
Error in Matrix(from, sparse = TRUE, doDiag = FALSE) : invalid 'data' from MetaspotsByGroups()
#173
weiyouzi321
closed
4 months ago
3
How to fix "Error in getClassDef(x@superClass, package = packageSlot(x))@virtual : no applicable method for `@` applied to an object of class "NULL" "
#172
danL9018
closed
4 months ago
3
How to control fusion of similar modules?
#171
Dimmiso
closed
5 months ago
2
TestSoftPowers get: Error in if (nGenes < 3) { : Argument is of length zero
#170
Roger-GOAT
closed
5 months ago
2
Error in dimnames(x) <- dn
#169
shanshancode
closed
4 months ago
3
Issue Creating Metacells
#168
Sandman-1
closed
1 month ago
5
Error in kMEs[cur_gene, ] : incorrect number of dimensions
#167
yamihn
closed
4 months ago
3
Further visualization
#166
awesomedeer
closed
5 months ago
2
Why some grey-assigned genes dont have max value kME_grey?
#165
Brawni
closed
6 months ago
2
Error while plotting dendrogram & module color bar is missing
#164
Dimmiso
closed
5 months ago
4
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