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I'm trying to track down the source of an error in the `nextNEOpi` pipeline. It's not immediately obvious what the issue is (memory, a singularity issue, something else?)
Any help would be greatly…
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Would it be possible to get Sabres into a conda package or on pip? That would make it much easier to use in our pipelines. I’d be happy to submit a PR to do this!
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Got this error when trying to use a .vcf file created using VarScan somatic following this tutorial (https://usegalaxy.eu/training-material/topics/variant-analysis/tutorials/somatic-variants/tutorial.…
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* pvactools version: 3.1.0
* Python version: 3.7..12
* Operating System: MAC OS / Docker
**Describe the bug**
I currently have pvactools installed on my local machine, and I have also set up the…
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Hi,
I am a fresh user of nextNEOpi and exciting to explore this well-built pipeline! But I met some errors when run my test dataset.
The Error:
```
Error executing process > 'fastp (Patient353…
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https://mp.weixin.qq.com/s/uOB46wdyEvdPkmrlNCbNLw
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Hi,
I am trying to load my own VCF using loadVCFs:
CNV.GR
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**Task**
Remove unnecessary `params` from rules in `variant_calling` Snakemake file. Values can be defined in the wrapper class level.
Rules:
- `variant_calling_gatk_hc_run`
- `variant_calling_g…
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Good morning and thank you very much in advance for your help. I have been trying to set up NASP on our cluster but I can not get it to run.
Please find my full attempt below:
```
(NASP) mkle…
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Dear BioContainers team,
Is there a way to know if a given combo is already built?
Say I want to know if [bwa+samtools](https://github.com/BioContainers/multi-package-containers/blob/master/comb…