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Currently reviewing 'phenotypic evidence' branch and creating this ticket to document discussions and notes.
[phenotypic similarity evidence.docx](https://github.com/evidenceontology/evidenceontolo…
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Hello Servant,
More than an issue, it is a question about HiCPro. Since getting the valid pairs is the most time-consuming process, is there a way to get the contact matrix with different kb resolu…
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Hi Yakir
I'm asking some questions about data preprocessing here as our messages may be helpful to those who have similar problems in data preprocessing.
My first question is should…
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Curation of this paper may need some new PHIPO terms as the pathogen effector protein is binding to host gene promoter. Therefore will probably need some pathogen protein - host DNA binding terms unde…
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@matentzn emailed to ask for a set of phenotypes that reflect the "priorities and interests of the users when browsing gene-related phenotype data of your own resources", which sounded a lot like phe…
mah11 updated
2 years ago
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so that we can use this for allele specific expression (and make a conclusion about whether our performance differs for het alts vs hom alts)
you could start by using the genotypes output by platin…
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Take a (filtered) RangedSummarizedExperiment and model using DESeq2 (or other methods) to identify differences based on condition. This will be best implemented after the filtering steps laid out by K…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/single-cell-genetics/cardelino
Confirm the follow…
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Running the following command results in failure:
```
pvacseq run \
--iedb-install-directory /opt/iedb \
-t 10 \
-p test_vep_phased.vcf.gz \
-e1 8,9,10,11 \
-e2 15,16,17,1…
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This is a publication that @JonMWilkes has selected to curate.
Curation link https://canto.phi-base.org/curs/c60773877297f4b1/ro/