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Hello,
Based on your science paper entitled "Brain cell type–specific enhancer–promoter interactome maps and disease risk association", you also performed RNA-seq in neurons/astrocytes/micorglia/…
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What would you recommend setting for `-c `argument? I have 24 scATAC datasets. Each dataset has anywhere from 1000-10000 cells. Is 50% a good choice? The cell types are neurons (excitatory/inhibit…
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The ENCODE DCC would like a term created for 'brain germinal matrix'
'The germinal matrix consists of a layer of cells near the fluid-containing ventricles of the brain. It is a highly cellular and h…
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https://mp.weixin.qq.com/s/3DlLp7xeQKR9WFmjTI0AbA
ixxmu updated
2 years ago
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>If this is a request for a new term, please provide us with the following information.
>1. Preferred term label (e.g., asplenia)
hyperphosphorylated tau
>2. Synonyms (e.g., absent spleen)
…
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https://mp.weixin.qq.com/s/pN4qWdUszuGqr8nOJstn8w
ixxmu updated
2 years ago
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Dear Sir or Madam,
I am working on post mortem brain samples and I have two samples (Alzheimer and non-Alzheimer brain samples) and from each sample I have two pairs of consecutive slices (10xgenomic…
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Hi,
I see that you have provided the simulated seqFISH grid norm data which is super helpful. Could you please provide the code for simulating lower-resolution profiling from seqfish data?
Many …
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Dear all, i would appreciate having your answer please to a simple question : is there a way to write the R code for AverageExpression() in such a way that we obtain the AverageExpression per CLUSTER …
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Recently (for different projects) Katie and I have been producing heatmaps like the attached showing the expression of a set of genes across samples, relative to their per-gene mean expreession. I now…