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I ran Sqanti3 with the isoAnnot option to get the gff3 file. I went for the approach not because I wanted a tappas compatible file but needed the UTR, Poly A annotations for my file. The process did f…
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The issue was detected when generating the jextract tool for FFI after the issue with native library loading (`.a`) was resolved (which is entirely different from the original problem being addressed …
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Hello,
I have ran:
ribotish predict -t TIS_bams_new/R3_ProAligned.sortedByCoord.out.bam -b CHX_bams_new/R3_ProAligned.sortedByCoord.out.bam -g gencode.v19.annotation.gtf -f GRCh37.p13.genome.fa …
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Hi Jörg-Michael, would it be possible to somehow provide a list of custom CDS names to the rule "Use CamelCase for known CDS names"? Maybe an additional file that can be handled independently from the…
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Please find attached the ord documents we walked through in our review:
- Reference CAP application: https://github.com/SAP-samples/cloud-cap-samples/tree/main/bookstore
- [1.ord.json](https://gith…
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Hello Alejandro
Thank you for developing this tool to convert the TOGA bed output to GTF. I need a GTF file to perform several downstream analyses, so this tool is exactly what I need! I appreciate…
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Currently if an external script (perhaps running on another machine) wants to grab a quick value from the CDS (i.e., What's the current air temperature) it involves a conversation: subscribe, ready, e…
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Dear
I tried to follow tutorial 2 on the example dataset and whenever plotting the CDS, I receive following error message. I have tried to resolve it myself without success.
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CDS now has a calendar line in LibCal. If I try to add try to add the hours to a page using the Wagtail Granular Hours widget, I get Hours for all Regenstein locations. Is it possible to add just the …