zhpn1024 ribotish issues

zhpn1024 / ribotish

Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data

http://dx.doi.org/10.1038/s41467-017-01981-8

GNU General Public License v3.0

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issues

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-- inprofile still requires bam

#42 ericmalekos closed 2 hours ago
2
-a option

#41 bshim181 opened 1 week ago
1
Predict Error

#40 bshim181 opened 2 weeks ago
11
Why do my predicted orf have so many stop codons inside

#39 hawkwoodpps opened 2 weeks ago
2
Not working with stringtie custom GTF

#37 ericmalekos closed 4 months ago
5
Why does ribotish call so many ORFs compared to price and ribocode

#36 chenwt opened 6 months ago
6
Encountered error when using ribotish predict

#35 lbwfff closed 9 months ago
2
Empty sequence error

#34 NastiaSkuba closed 10 months ago
2
TypeError: unsupported operand type(s) for +=: 'NoneType' and 'int'

#33 haowBio opened 10 months ago
7
ribotish predict module run error

#32 haowBio closed 1 year ago
2
Use of 5' mismatch reads in predict

#31 ericmalekos closed 1 year ago
1
AttributeError: 'Exp' object has no attribute 'sq'

#30 noepozzan opened 2 years ago
4
No reads found!

#29 noepozzan closed 2 years ago
52
Wrong CDS annotation

#28 agsanbel opened 2 years ago
6
The meaning and differences in TisType

#27 ruixuan-zhang opened 2 years ago
10
TypeError: '<' not supported between instances of 'NoneType' and 'int' when running predict module

#26 mt1022 closed 2 years ago
5
run mistakes

#25 czppeter opened 2 years ago
4
TypeError: unsupported operand type(s) for +=: 'NoneType' and 'int'

#24 ErinDuffyLacy closed 2 years ago
5
TypeError: '>=' not supported between instances of 'NoneType' and 'float'

#23 ericmalekos closed 1 year ago
3
ribotish quality "no reads found" for TIS reads

#21 ericmalekos closed 1 year ago
10
ribotish quality: error: argument -d: expected one argument

#18 yycunc opened 3 years ago
2
--altcodons ACG,CUG

#17 etmorefish closed 3 years ago
0
ribotish tisdiff error?ZeroDivisionError: integer division or modulo by zero

#16 etmorefish opened 3 years ago
10
what the types of TisType mean?

#15 shwdmsh closed 3 years ago
2
how to edit the parameter (-d DIS Position range near start codon or stop codon)?

#14 shwdmsh closed 3 years ago
3
What dose this Horizontal line mean

#13 shwdmsh closed 3 years ago
3
Feature request: Ribo-seq counts in the results

#11 nsotta opened 4 years ago
2
Feature Request - Add 3' end match for RPFs

#10 alanlorenzetti closed 2 years ago
6
ValueError: start out of range (-21) running ribotish quality

#9 rbmk1000 closed 2 years ago
4
"wrong exon strand" and "stop codon error"

#8 sjannielefevre closed 4 years ago
17
Visualization of single transcripts with a-site/p-site coverage

#7 AlexFryd opened 4 years ago
4
issues about quality

#6 Wang497 closed 2 years ago
6
Python 3 compatibility

#5 dpryan79 closed 2 years ago
1
Ribotish on prokaryotic ribosome profiling

#4 dgelsin closed 2 years ago
13
Error running ribotish predict with multicore parameters

#3 elabaronne closed 2 years ago
2
New release for python 3

#2 eggzilla closed 5 years ago
3
Error when running ribotish tisdiff

#1 marcasriv closed 2 years ago
1