-
For a codiv analysis, add a term for every node that is part of a simplex of all sister nodes. This forces the model to 'expect' that the abundance of a parent node will be divided among it children.…
-
(a mixed bag of issues, without overview or references for actual algorithms)
triggered by looking at some literature for robust transformation (box-cox issue and PR)
https://github.com/statsmodels/st…
-
### STORM Processing
For the STORM processing we will be using ThunderSTORM from ImageJ. The documentation for it can be found in the next links:
- [Github Repository](https://github.com/zitmen/…
-
CORE
- [ ] computing-needs-all-voices
- [ ] contracts
- [ ] debugging
- [ ] defining-values
- [ ] function-composition
- [ ] functions-dr
- [ ] functions-examples-definitions
- [ ] function…
-
As the author put it, this algorithm is much faster. For a randomly generated 3000x3000 cost matrix, it'll take a fraction of seconds to solve.
```
N_a = 3000
N_b = 3000
# Random costs
dist_mat…
-
**Describe the bug**
The non-adaptive localisation implemented in the job LOCALISATION_JOB in semeio fails if the ERT model contains fields and localisation config specify correlation group containi…
-
Hello,
The documentation seems to suggest that I can pass n-dim arguments to `distance_correlation`, however as soon as I pass a `41318, 2, 5` tensor, I get errors. Reading #50 seems to suggest tha…
-
Have you considered using something like microsoft's Whitenoise to do DP analysis? right now your correlation entropy is pretty beatable by using random known noise values
-
The DDMRA results I get are pretty dissimilar to the original paper's findings. While I expect some differences driven by differences in preprocessing and denoising methods, these go beyond my expecta…
tsalo updated
2 years ago
-
Dear Michael,
I am conducting an analysis in which I aim to rank all known sources of variance (ie cell type, donor, technical artifacts) in my single-cell RNA-seq dataset. Among others, I am compu…