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McMinds-Lab
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analysis_templates
Basic data analysis scripts to be modified for each project
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Basic bioinformatics
#32
rmcminds
opened
3 months ago
1
migrate tutorials to new repo
#31
rmcminds
opened
4 months ago
0
Add link to stat rethink
#30
rmcminds
opened
11 months ago
0
change default sbatch options
#29
rmcminds
opened
1 year ago
0
create sensitive dada2 workflow
#28
rmcminds
opened
1 year ago
0
remove short seqs from custom ASV workflow
#27
rmcminds
closed
1 year ago
4
create 'reverse non-centered' phylogenetic models in stan
#26
rmcminds
opened
1 year ago
0
added ftl
#25
AlexanderShane
closed
2 years ago
1
added de-kupl
#24
AlexanderShane
closed
2 years ago
0
new BBduk
#23
AlexanderShane
closed
2 years ago
1
write brms model for zero inflated and contaminated regression
#22
rmcminds
opened
2 years ago
0
write Cenote-Taker 2 workflow
#21
rmcminds
opened
2 years ago
0
write DE-kupl workflow
#20
rmcminds
closed
3 months ago
0
getting data readme
#19
rmcminds
closed
10 months ago
1
Added Scripts
#17
AlexanderShane
closed
2 years ago
1
create approximate multinomial models
#16
rmcminds
opened
2 years ago
0
generalize or get rid of feature-level variance estimates in zip_glm
#15
rmcminds
closed
2 years ago
0
scale covariance matrices based on phylogeny so determinant = 1, not to correlation matrices
#14
rmcminds
opened
2 years ago
0
develop atomm-like stan model to accept arbitrary number of interacting subsets
#13
rmcminds
opened
2 years ago
4
model codiv as evolution of evenness
#12
rmcminds
opened
2 years ago
2
dada changes
#11
rmcminds
closed
2 years ago
0
updated r script
#10
AlexanderShane
closed
2 years ago
0
change to current data
#9
AlexanderShane
closed
2 years ago
0
added picrust directory
#8
annmathew1218
closed
2 years ago
0
implement explicit intercepts for lvip_glm or otherwise implement OU attraction parameter
#7
rmcminds
closed
2 years ago
3
remove divergence time root parameter
#6
rmcminds
closed
3 years ago
1
estimate divergence times in stan model for lvip_glm
#5
rmcminds
closed
3 years ago
1
Create Visualization
#4
rmcminds
closed
2 years ago
0
test lvip_glm
#3
rmcminds
opened
3 years ago
2
create picrust pipeline
#2
rmcminds
opened
3 years ago
2
Create basic 16S pipeline
#1
rmcminds
closed
2 years ago
2