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hello, i wonder What is the file in this path,or how to generate them.
thanks a lot
![d53ea62b7b23dbfdea6d0b72b89282f](https://github.com/tyh-19/Pipeline-for-multiomics/assets/154750598/bb86abdb-c…
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Hi dear developers of the ABC model,
I'm using ABC model for data of build GRCh38.
Up to now, I was only able to run predict.py without using HiC data and only with power law estimate.
For a quan…
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Hi,
I'm having issues whenever I try to use a **.hic** file type to compute powerlaw fit. From the github, I thought I could feed in just a **.hic** file, but **compute_powerlaw_fit_from_hic.py** s…
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Hi,
I tried to make the average Hi-C profile for hg38. So, I downloaded the hic files of 10 cell types for hg38 and created "KRobserved.gz" and "KRnorm.gz", respectively. Then I ran the 'makeAverageH…
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Hi,
We are trying to reproduce the ABC scores of the K562s (Fulco2019) scores in Nature 2021.
We keep getting values that are somewhat correlated but not quite.
the first step of candidate enhanc…
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Hi there,
Any ideas about whether ABC can be used with single-cell ATAC-seq data?
Best,
David Green
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Please write your comments about the miRNA annotation guidelines in this issue.
Reported by: rachhuntley
Original Ticket: [geneontology/annotation-issues/1292](https://sourceforge.net/p/geneontology…
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The code runs fine with the example inputs but fails with KeyError using own inputs. Traced the problem back to my mm10 gene file and chromosome size file. Recreated both and ensured no trailing space…
pgh10 updated
9 months ago
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Dear Author,
I am deeply grateful for your development of such an outstanding tool. I have a question that might seem naive: I have already performed an ABC analysis based on my data and obtained a…
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I've followed the PBMC tutorial on my multi-ome data, and now am trying to perform the last step `run_scenicplus` which crashes with this error:
```
2023-10-26 23:37:42,920 SCENIC+_wrapper INFO …