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Make View Data at [Provider] button available for the following providers:
Missing:
- [x] Curie-BC : general link https://institut-curie.org/plateforme/curiecoretech-vivo-preclinical-experiments
- [x]…
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Hello!Thank you for your outstanding work!
I was experiencing an error: `PermissionError: [Errno 13] Permission Denied: './gdc-client'` while running the code.
`(venv) (pythonProject) lyl010221…
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https://www.ncbi.nlm.nih.gov/pubmed/29641966
The dataset is on dbGAP (NCICCR: phs001444) and GDC (NCICCR-DLBCL)
- [ ] [create a issue on datahub](https://github.com/cBioPortal/datahub/issues/new…
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Hi there,
I am trying to download the more recent datasets: CGCI-BLGSP, CPTAC-3, BEATAML1.0-COHORT, CTSP-DLBCL1, MMRF-COMMPASS and NCICCR-DLBCL.
All of these give the error message:
"Error in e…
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I used GDCquery_Maf to obtained the somatic mutations in maf format of a certain tumor type, where I can not find the information about the number of affected cases in a cohort of the mutations, which…
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I don't know if this is an openssl problem or not, but seems like it might be so I'm reporting it here.
I had my ethernet MTU set to Jumbo. This turned out to cause a failure to be able to connect…
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"Create and download a manifest and metadata json file from the gdc website for the whole slides images of interest"
What exactly do we have to search for the manifest and metadata files on https://p…
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As reported by @rkikinis:
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I am getting strange black-ish boxes when calling
openslide_read_region(osr, data, 0,0, 0, w,h);
to read an entire slide at once.
## Context
**Issue type**: bug report
**Operating system** …
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When I run this -
library(tidyverse)
library(TCGAbiolinks)
library(DESeq2)
query