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### Description of bug
The documentation pages shows that hostile is supported. But the CLI tool seems to know nothing of it.
Here is the conda env I used to install.
```
name: multiqc
chan…
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### Description of bug
In version 1.18 of MultiQC CollectWgsMetrics from Picard is picked up, but in the two latest versions I've checked 1.22.1 and 1.22.2 it's not detected. Neither from the Sentieo…
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### Description of bug
I am using multiqc to make reports on `samtools stats` and `samtools coverage` logs. MultiQC recognized samtools stats output, but not samtools coverage output.
I tried to …
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### Description of bug
Hi,
I was previously able to run multiqc with htstream support. However, I have recently upgraded to a new computer (ubuntu 22.04.1) and my new multiqc installation doesn'…
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I can not use any command of hicexplorer. It always gave the following text:
Illegal instruction (core dumped)
hicxplorer version is 3.7.2
python version is 3.8.15
I tried to reinstall hicexpl…
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### Description of bug
This error occurs with the newest dev version ([8851655](https://github.com/MultiQC/MultiQC/commit/88516550ad52c07b5c9f12543c409fd54151f254) and before), potentially related …
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**Conda version installed**
hicInfo 3.7.dev, python = 3.8
**Command:**
hicMergeLoops -i inter_30_1kb_corrected.cool inter_30_5kb_corrected.cool nter_30_25kb_corrected.cool -o merged_results.bed…
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I think it might be a good idea to replace `\s` with a space ` ` in all tools that use something like `re.sub('[^\w\-\s]` on the element identifier or name attribute of datasets.
seem to affect th…
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I would like to use the command line functionality of hicexplorer to automatically plot hic matrices as part of my workflow. I have generated `.hic` files that can be loaded by Juicebox for manual ed…
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Firstly, thanks for hiktk - it is a very handy conversion, hard to find and works fast.
Does it know how to handle `format_version:3` from a recent cooler release?
I'm new to hic so just guessing i…