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paulsengroup
/
hictk
Blazing fast toolkit to work with .hic and .cool files
MIT License
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Fix various bugs when fetching interactions as Eigen matrices
#227
robomics
opened
16 hours ago
1
Rewrite hictk's fuzzer
#226
robomics
opened
1 day ago
0
Improve support for "square" Cooler files
#225
robomics
opened
2 days ago
2
Run the full CI
#224
robomics
opened
2 days ago
0
Add --no-create-weight-link CLI flag where appropriate
#223
robomics
closed
2 days ago
1
Improve output of hictk metadata
#222
robomics
closed
2 days ago
1
Use prettier to format MD and YAML files
#221
robomics
closed
2 days ago
1
[testing] rewrite fuzzy test suite
#220
robomics
opened
4 days ago
0
[feature] improve hictk metadata output
#219
robomics
closed
2 days ago
0
[feature] implement cis-inly/trans-only pixel fetchers
#218
robomics
opened
4 days ago
0
Overhaul of the integration test suite
#217
robomics
opened
6 days ago
1
[bug] --no-create-weight-link CLI option is missing from hictk balance scale and vc
#216
robomics
closed
2 days ago
0
Fix CLI exit code
#215
robomics
closed
1 week ago
1
Use llvm-cov instead of gcov
#214
robomics
closed
6 days ago
0
[docs] improve docs for hictk metadata
#213
robomics
opened
1 week ago
0
[testing] rewrite integration tests using python
#212
robomics
opened
1 week ago
0
[ci] run the extended CI pipeline before tagging the next release
#211
robomics
opened
1 week ago
0
Improve error message when temporary folder cannot be safely determined
#210
robomics
closed
1 week ago
1
Reduce size of hictk's Docker image
#209
robomics
closed
1 week ago
0
Update docs for installing hictk from source
#208
robomics
closed
2 days ago
0
[ci] run integration tests as part of Windows CI
#207
robomics
opened
1 week ago
0
[feature] support extracting individual cells from single-cell files
#206
robomics
opened
1 week ago
0
[feature] support extracting resolution from multi-resolution files
#205
robomics
opened
1 week ago
0
Implement hictk metadata command
#204
robomics
closed
1 week ago
1
Add option to override count type used to convert .hic files to .[m]cool format
#203
robomics
opened
1 week ago
1
Properly support merging coolers with FP counts
#202
robomics
closed
1 week ago
1
Properly support zoomifying coolers with FP counts
#201
robomics
closed
1 week ago
1
Allow dynamically linking to Arrow libs even when building with static linking
#200
robomics
closed
1 week ago
1
Expose bin_ptr() accessor wherever it makes sense
#199
robomics
closed
1 week ago
1
Update .pre-commit-config.yaml
#198
robomics
closed
1 week ago
1
Fix bug when fetching whole-genome interactions as sparse matrix
#197
robomics
closed
2 weeks ago
1
Fix bug when fetching whole-genome interactions as dense matrix
#196
robomics
closed
2 weeks ago
1
Fix docs
#195
robomics
closed
2 weeks ago
0
hictk published on Bioinformatics!
#194
robomics
closed
2 weeks ago
0
Using Apptainer/Singularity gives `FAILURE! hictk encountered the following error: filesystem error: temp_directory_path: No such file or directory`
#193
paulmenzel
closed
1 week ago
4
How to load the converted .hic file into Juicerbox
#191
Nuturetree
closed
1 month ago
6
how to load
#190
Nuturetree
closed
2 months ago
1
Prepare for release
#189
robomics
closed
2 months ago
1
Bump docker/build-push-action from 5 to 6
#188
dependabot[bot]
closed
2 weeks ago
0
Various fixes to the build system
#187
robomics
closed
2 months ago
1
Fix typo in conanfile.py
#186
robomics
closed
3 months ago
1
[feature] transformers::ToDataFrame(): support iterating over dataframe in chunks
#185
robomics
opened
3 months ago
0
Drop unnecessary dependency from conanfile.py
#184
robomics
closed
3 months ago
0
Update docs
#183
robomics
closed
2 months ago
0
Ensure pixel transformers are well-behaved when given an empty range of pixels
#182
robomics
closed
3 months ago
1
For the time being, refuse to build on big-endian architectures
#181
robomics
closed
3 months ago
1
Support opening .hic files with only 1 bin per chromosome
#180
robomics
closed
3 months ago
1
Support for fetching interactions from the lower triangle when it makes sense
#179
robomics
closed
3 months ago
1
Error creating All:All matrix
#178
Phlya
closed
3 months ago
3
Fix typo
#177
Phlya
closed
3 months ago
1
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