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### General AWS Linux
It's is based on CentOS, same family as RedHat. The package management system is 'RPM" via "yum'
i.e.
```
sudo yum list
sudo yum info
sudo yum install
```
### Blast…
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TEST, fails (tool test): https://github.com/mvdbeek/usegalaxy-tests/issues/18
ORG, fails (tuto data): https://usegalaxy.org/u/jen/h/test-prokka-1146galaxy1
EU, success (tuto data): https://usegala…
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Hi,
I am trying to install prokka using conda. However, it shows an error when I run it. I tried in different ways to install prokka but it still shows the error while running and does not produce o…
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HMMER has a branch that can be built from source for a M1 chip https://github.com/EddyRivasLab/hmmer/tree/h3-arm, but it looks like they are holding out on merging it to main for awhile. This seems to…
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Failure reported at bugs & looks technical
toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.6+galaxy1
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Python uses 0-indexing with an exclusive end coordinate. The hmmer3 domain table (from/to) uses 1-indexing with an includive end coordinate.
However it *looks* like, when subsetting sequences for t…
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Hi,
I've installed version 5.54-87.0 via conda. I followed the instructions to download the tarball and move the data files into the appropriate location. But, when I try to run the initial setup I…
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Implement functions that extract reference human readable descriptions from predictions obtained from Mercator4 (MapMan ontology) and HMMER3 against PfamA. Split these reference annotations into word …
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there is need profile.hmm file in your software.but my species is fish,could you tell me how to gain the files? thanks~
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Hi, alphafold team~
As 104 cpus and no gpu available in my sever, I used
`run_docker.py --use_gpu=False`
to run alphafold.
But alphafold only used a fewer number of cpus (less than 8 mostly).…