google-deepmind alphafold issues

google-deepmind / alphafold

Open source code for AlphaFold 2.

Apache License 2.0

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#1044 ghost opened 3 days ago
0
FTP blocked? Try the rcsb aws bucket

#1043 danpf closed 1 week ago
0
Alpha fold

#1041 taisom27 closed 1 week ago
0
Alpha fold dependencies plot protein command not executing

#1040 SatyajitMishra1 closed 1 week ago
1
Error in ' install dependencies"

#1039 christinapapa opened 2 weeks ago
1
Failed to build docker on cuda:11.0.3-base

#1038 hyeonLIB opened 3 weeks ago
1
Not able to run prediction __ AlphaFold2.ipynb

#1037 asm-cell opened 3 weeks ago
0
does alphafold 2 explicitly model co-evolution?

#1036 PatschD opened 1 month ago
0
Alphafold stopped using GPU after upgrade to Ubuntu 24.04.1 (noble)

#1035 hofmank0 opened 1 month ago
3
Update requirements.txt

#1034 PentesterPriyanshu opened 1 month ago
2
Add rsync notice

#1033 MamfTheKramf opened 1 month ago
1
README does not mention that rsync is needed for DB download

#1032 MamfTheKramf opened 1 month ago
0
how is alpha fold 3 trained

#1031 joepareti54 opened 1 month ago
0
requirement:tensorflow-cpu

#1030 nibingwei123 opened 1 month ago
0
Alphafold runs will not find the GPU

#1029 tuttlelm closed 3 weeks ago
3
Updated requirements.txt

#1028 vignesh1507 opened 1 month ago
2
Hopefully that helps.

#1027 SocialNinjaMaster closed 1 month ago
1
Installation without docker

#1026 fglaser opened 1 month ago
0
Remove $ROOT_DIR from the argument of gunzip command

#1024 kojiwell opened 1 month ago
1
lost some output files

#1023 xjhzjucas opened 1 month ago
0
Endless "[Perf]: MatMul reference implementation being executed generated" messages and dramatic inference slowdown upon updating to docker 27.3.1

#1021 lucajovine opened 2 months ago
3
Could we track how long one AlphaFold program run?

#1018 WenWu-Bio opened 2 months ago
1
Dockerfile problem: jaxlib-0.1.75+cuda11.cudnn805-cp37-none-manylinux2010_x86_64.whl is not a supported wheel on this platform

#1017 WenWu-Bio opened 2 months ago
0
Segment default 段错误，import pdbfixer，and from stimtk import app

#1015 zhangyichen534 opened 2 months ago
1
ดู] ทองประกายแสด ใบเฟิร์น ดูย้อนหลัง Ep.7 ตอนที่ 7 เต็ม เรื่อง ดูออนไลน์ฟรี HD

#1014 ghost closed 2 months ago
0
reorganized added scripts and docker files

#1013 biochunan closed 2 months ago
1
IndexError: list index out of range

#999 Sanju2125 closed 3 months ago
1
IndexError: list index out of range

#998 Sanju2125 closed 3 months ago
1
Weird Inference Behavior with GPU: Sometimes it works or Segmentation Fault/Filesystem Space Error

#997 juliocesar-io opened 3 months ago
0
Question about the self-distillation dataset

#996 raouf-keskes opened 3 months ago
0
Running AlphaFold on models larger than AMD GPU available memory

#958 dipietrantonio opened 4 months ago
4
Is the AlphaFold2 PDB structures available for download predicted using the UniProt canonical sequence?

#957 yang-arina opened 4 months ago
0
Inference speed question.

#956 Lix1993 opened 4 months ago
0
ValueError: Minimization failed after 100 attempts.

#955 zcswnm opened 4 months ago
4
Fix deprecation warning / error from BioPython

#954 edawson closed 6 days ago
2
Falling back to the CUDA driver for PTX compilation; ptxas does not support CC 8.9

#953 rafaeltiveron opened 5 months ago
7
Cannot download pdb70 database

#952 Lix1993 opened 5 months ago
0
@YiningWang2

#951 fereidoon27 opened 5 months ago
0
optimize alphafold2 speed on different GPUs

#950 gorliver opened 5 months ago
0
Bulk download from AlphaFold3 server

#949 johnnytam100 closed 3 days ago
1
alphafold crash causes nvml library mismatch which cannot be resolved. must reinstall ubuntu OS

#948 rlwoltz opened 5 months ago
2
Fix small typo in `run_alphafold.py`

#947 amorehead opened 5 months ago
0
InvalidSpec: The package "nvidia/linux-64::cuda-compiler==12.5.0=0" is not available for the specified platform

#945 ocstx opened 5 months ago
13
JSON upload to AF3 server saves drafts without running, then gives remaining jobs is 0

#944 NooriFatima closed 5 months ago
0
Using rotamers for mutations

#943 n1812 opened 5 months ago
1
The request and urllib3 version dependency conflict problem occurs, and the error ocker.errors.DockerException: Error while fetching server API version: request() got an unexpected keyword argument 'chunked' appears

#942 hezhiqiang8909 opened 5 months ago
0
mmCIF much larger than stated

#940 stianale opened 6 months ago
0
Add docker cd

#939 jkwmoore closed 6 months ago
2
Support for sampling

#938 tkramer-motion closed 6 months ago
1
Specifying Disulphide bonds to AlphaFold

#937 vineeshsriramoju opened 6 months ago
1