google-deepmind alphafold issues

google-deepmind / alphafold

Open source code for AlphaFold.

Apache License 2.0

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issues

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ValueError: Minimization failed after 100 attempts.

#955 zcswnm opened 3 days ago
1
Fix deprecation warning / error from BioPython

#954 edawson opened 6 days ago
1
Falling back to the CUDA driver for PTX compilation; ptxas does not support CC 8.9

#953 rafaeltiveron opened 6 days ago
2
Cannot download pdb70 database

#952 Lix1993 opened 1 week ago
0
@YiningWang2

#951 fereidoon27 opened 1 week ago
0
optimize alphafold2 speed on different GPUs

#950 gorliver opened 2 weeks ago
0
Bulk download from AlphaFold3 server

#949 johnnytam100 opened 2 weeks ago
0
alphafold crash causes nvml library mismatch which cannot be resolved. must reinstall ubuntu OS

#948 rlwoltz opened 3 weeks ago
2
Fix small typo in `run_alphafold.py`

#947 amorehead opened 3 weeks ago
0
Alphafold

#946 Zeko19981 opened 3 weeks ago
0
InvalidSpec: The package "nvidia/linux-64::cuda-compiler==12.5.0=0" is not available for the specified platform

#945 ocstx opened 3 weeks ago
8
JSON upload to AF3 server saves drafts without running, then gives remaining jobs is 0

#944 NooriFatima closed 3 weeks ago
0
Using rotamers for mutations

#943 n1812 opened 4 weeks ago
1
The request and urllib3 version dependency conflict problem occurs, and the error ocker.errors.DockerException: Error while fetching server API version: request() got an unexpected keyword argument 'chunked' appears

#942 hezhiqiang8909 opened 1 month ago
0
mmCIF much larger than stated

#940 stianale opened 1 month ago
0
Add docker cd

#939 jkwmoore closed 1 month ago
2
Support for sampling

#938 tkramer-motion closed 1 month ago
1
Specifying Disulphide bonds to AlphaFold

#937 vineeshsriramoju opened 1 month ago
1
Downloaded cif file from open access doesn't have secondary structure assignments

#936 jiangandrew closed 1 month ago
2
Open Access

#935 SocialNinjaMaster opened 1 month ago
0
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpzszd_m92/output.a3m'

#934 33LIKL opened 2 months ago
0
An error free installation package

#933 xianyu-123 opened 2 months ago
1
Can I use a custom PDB file for multimer prediction

#932 hopanoid opened 2 months ago
0
Flash attention

#931 oliverdutton opened 2 months ago
4
bfloat16 support for monomer models

#930 oliverdutton opened 2 months ago
0
The definition of bins in Predicted Aligned Error Head(PAE) may be wrong

#929 xiergo opened 2 months ago
0
How to get iPAE

#928 ryupath opened 2 months ago
0
Database Installation

#927 WishIWasBornInTheCreteaceousEra opened 2 months ago
0
Problem with step four in colabpro

#926 ScottStro opened 2 months ago
0
I am unable to run the fourth step normally, the following is the error code

#925 91984658 opened 2 months ago
5
AttributeError: module 'jax' has no attribute 'linear_util'

#924 laurahum opened 2 months ago
4
ValueError: Minimization failed after 100 attempts.

#923 rytakahashi closed 2 weeks ago
4
AttributeError: module 'haiku' has no attribute 'custom_creator'

#922 apal6 opened 3 months ago
1
Minimizing failing due to CUDA error

#921 gabepen opened 3 months ago
1
RuntimeError: HHblits failed. Unrecognized HMM file format in '468479486'

#920 Madhumitha0206 opened 3 months ago
0
Issue with missing templates during Multimer Mode running

#919 monojun opened 3 months ago
0
How do I know when to update my local database?

#918 zrt2002 opened 3 months ago
0
--model_preset=multimer: command not found

#917 apal6 opened 3 months ago
0
Fix resolution field in mmcif_parsing

#916 ljarosch closed 2 months ago
1
AlphaFold uses the wrong resolution field during structure parsing

#915 ljarosch closed 2 months ago
2
Fatal Python error: Segmentation fault

#914 ghost opened 3 months ago
0
Use `/usr/bin/env` for bash shebang

#913 abhillman opened 3 months ago
1
Test

#912 lokinegalur closed 3 months ago
2
Test

#911 lokinegalur closed 3 months ago
2
The proper way to find the maximum subbatch_size?

#910 estrozi opened 3 months ago
0
ValueError: Could not find CIFs

#909 leonhardt913 opened 3 months ago
3
Does it cost money to download the dataset or not?

#908 covalspace closed 3 months ago
0
Getting more than 25 predicted models for multimer mode

#907 varunmc92 closed 3 months ago
4
prediction results are not consistent

#906 lijing28101 opened 3 months ago
2
error whole running alphafold google colab

#905 Dhire123 opened 4 months ago
2