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My primary interest is to use the peptide quantification from DIANN for downstream analysis. Would it be better to use a cohort specific library using --gen-spec-lib or a sample specific library? Usin…
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Hi, I have read your research paper " Deep learning guided optimization of human antibody against SARS-CoV-2 variants with broad neutralization" and have a question that where is the Mutation Librari…
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@davek44 it's me again. we have run the ATAC-seq of pig to train the models, and then want to predict the effects of SNPs across the open chromtain regions. we noticed that you provided two scripts t…
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Hi,
Is it possible to make DIA-NN to output library retention times aligned to particular RT scale? I wish to use several libraries for one quantification. Is it possible to generate new library for…
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Hi there,
First, the code for the app is written very well and the idea behind it is very promising !
My issue is, I have a set of test data with sequences known to be AMPs according to other (DNN…
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Hello,
I got the following message when I tried to install the nodes in KNIME:
Cannot complete the install because some dependencies are not satisfiable
nl.esciencecenter.e3dchem.knime.silicosi…
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Hi dear developers,
We have generated an in-silico HRMS/MS database focused on our model organism. These compounds are structurally described in the literature but are absent in the spectra databa…
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**Description**
I don't know if this is an issue or not. But clinicians tend to filter our variant-lists based on genes of interest, I think this generally is done in Scout, however maybe some cust…
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### Summary
Migrate and integrate ('port') the code for the stage controller from [B_Raman_Test](https://github.com/Alvaro-FG/B_Raman_Test) into the microscope framework. It should have a 'simulated' …
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Good day!
I have a question about whether I should or not use the `population.size = TRUE` parameter when calling `computeCommunProb`. I am integrating data from different platforms, and some sourc…