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calico
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basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
Apache License 2.0
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akita train error
#200
guandailu
opened
2 months ago
0
AssertionError, Basenji_test.py 'Conv1D' object has no attribute 'input_shape'
#199
PouriaAzadehR
opened
3 months ago
1
Question of expected data
#198
seraphimangel77
opened
3 months ago
1
Error from basenji import genome
#197
seraphimangel77
closed
3 months ago
1
basenji_read overflow
#196
ElArquitectorgo
opened
4 months ago
1
Question about the preprocessing script bam_cov.py
#195
whui2bioinformatics
opened
4 months ago
1
Basenji installation issues
#194
seraphimangel77
closed
3 months ago
4
Tensorflow / Traceback error.
#193
jesspeers
closed
5 months ago
2
Problems during model training.
#192
amingc3
opened
5 months ago
7
Prepare data
#191
amingc3
closed
4 months ago
1
Reproduce the Enformer's input sequences split
#190
sararb
opened
6 months ago
1
OOM issue
#189
BioCUCKOO
closed
8 months ago
0
Issue with final matrix?
#188
16nbb1
opened
8 months ago
0
Akita: Loading weights for newer models results in mismatch
#187
jakevc
closed
9 months ago
2
When using Akita for single-cell prediction on the HCT116 cell line, the Pearson correlation coefficient is much lower.
#186
1944498970
opened
10 months ago
8
Seeking Guidance on bam_cov.py Parameters
#185
zhanxiangzong
closed
10 months ago
2
Attention layer
#184
samuel-g-bates
closed
10 months ago
4
Making Akita predictions for different bin size
#183
shu-z
closed
11 months ago
2
tutorial training with --sample 0.05
#182
zyj1729
closed
11 months ago
3
Pre-process tutorial file not working
#181
riapai
closed
10 months ago
2
How to convert the keras model to a basenji model
#180
houruiyan
opened
11 months ago
1
Stable environment configuration
#179
tzhu-bio
opened
1 year ago
1
How to set different GPU No. ?
#178
houruiyan
closed
12 months ago
2
basenji_data_align.py train/test/validation splits
#177
maroll
closed
1 year ago
2
handling blacklist\unmappable
#176
yardenmatok203
opened
1 year ago
1
Expose 'raw' argument
#175
Yaoyx
closed
11 months ago
2
Black list
#174
yardenmatok203
closed
1 year ago
6
Expose 'raw' as an argument?
#173
Yaoyx
opened
1 year ago
2
.hic
#172
yardenmatok203
opened
1 year ago
0
None in maps
#171
yardenmatok203
opened
1 year ago
4
Problem with calculating the target based on the gene sequence
#170
wananal
opened
1 year ago
1
No checkpoints found.
#169
houruiyan
opened
1 year ago
1
distiller
#168
yardenmatok203
opened
1 year ago
6
Weird targets
#167
yardenmatok203
opened
1 year ago
2
Output regions from Akita
#166
ahmedabbas811
opened
1 year ago
1
error with akita_data. py
#165
yardenmatok203
opened
1 year ago
3
How to prepare TFRecords files for saluki training
#164
hamanakakohei
closed
1 year ago
1
Question about Basenji2 receptive field
#163
pkathail
closed
1 year ago
2
pygene installation
#162
hamanakakohei
closed
1 year ago
2
Question about Gene Expression Training Preprocessing
#161
wkl1990
opened
1 year ago
3
akita can't train
#160
bioczsun
opened
1 year ago
1
Tensorflow records generated with basenji_data.py differ from original
#159
icdh99
opened
1 year ago
1
Problem with multigenome training with > 2 genomes
#158
raphaelmourad
opened
1 year ago
1
Training with multiple directories
#157
raphaelmourad
opened
1 year ago
1
question about clip threshold in basenji/enformer.
#156
r1cheu
closed
1 year ago
2
Blacklist file & unmappable regions
#155
icdh99
closed
1 year ago
2
Issue running basenji_data.py
#154
petnas
opened
1 year ago
2
Basenji Features used for Whole Blood Fine-Mapping
#153
aga-relation
opened
1 year ago
3
failed running "basenji_sat_bed.py" in tutorials
#152
yal054
closed
1 year ago
4
train/test/valid sequences for predetermined regions
#151
icdh99
closed
1 year ago
2
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