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Duration sent via ZMQ to any microscope acquisition machine (e.g. 2P or lightsheet) is only updated at experiment __init__. When parameters that affect experiment duration are changed in the GUI this …
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**Describe the bug**
I`ve successfully made a registration between my background channel and atlas, but when I ran cellfinder, there is always error, which no atlas existing.
**To Reproduce**
20…
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The new 1 button starting procedure seems to be producing stacks at random planes during the z scanning, which can be a bit annoying for every volumetric analysis
vigji updated
3 years ago
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First, sorry for all the issues I posted recently O.o, overall I really think StarDist is a really neat architecture! The results I am getting after training are really great !
Right now though, th…
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The code
```python
def receive_save_parameters(self):
try:
self.save_parameters = self.saving_parameter_queue.get(timeout=0.001)
except Empty:
pass
…
vigji updated
3 years ago
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The exact same settings can result in a very broad range of chunk sizes (one order of magnitude). Two subsequent acquisitions produced:
`"shape_full": [18000, 12, 248, 552], "shape_block": [20, 12,…
vigji updated
3 years ago
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And offer presets (for cerebellum etc)
vilim updated
4 years ago
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voxel size (binning dependent) and inter-plane spacing
vilim updated
4 years ago
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Support segmentation and tables with grid images.
Current idea: one table per segmentation (in our usual layouy) and that gets merged by the viewer.
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**User story**
To better support the transition between z-slices, I implemented my own version of `MultiscaleImageLayer`. I would like to maintain support for interlaced RGB images.
If you are i…