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```
cd /build/mmseqs2-11-e1a1c+ds/obj-aarch64-linux-gnu/src && /usr/lib/ccache/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-11-e1a1c+ds/…
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I think I've found a typo on the rolling hash function of linclust, at line
https://github.com/soedinglab/MMseqs2/blob/11e2736028cc12a6523b507b061158903f8de317/src/linclust/kmermatcher.cpp#L55
I gu…
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I have a question regarding the choice of linclust parameters in the Steinegger et al. 2019 paper.
These are the parameters:
--kmer-per-seq 80 --cluster-mode 2 **--cov-mode 1 -c 0.9** --min-seq-…
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## Expected Behavior
clusthash uses all threads and result2flat produces a complete fasta file (not ending in %)
## Current Behavior
clusthash seems to use only 1 of all given threads, and eventua…
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## Expected Behavior
My colleagues and I have noticed an unexpected behavior with linclust (using the easy-linclust pipeline in particular), it appears to not be clustering identical sequences unless…
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## Expected Behavior
After a plass assembly, the clustering of the various coassemblies.
```
mmseqs linclust -c 0.9 --min-seq-id 0.95 --cluster-mode 0 \
${ou…
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May I fliter a cluster result to obtain a sub-set of clusters?. I have a list of clusters (the representative sequence) and I want to get only this clusters.
How can I do it?
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When I run `mmseqs taxonomy`, it converts the *_h file for the input sequence db from a standard file to a symlink that points at itself. So the symlink is then broken, and `mmseqs taxonomy` fails. I'…
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Continue the discussion with @sofie8 from #258
> At the moment I was running atlas2 like this:
> qsub -l nodes=1:ppn=36 -l pmem=5gb -l walltime=72:00:00 -A myproject myjobscript.pbs
> With the f…
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I'm trying to get the abundance of gene clusters generated by linclust. My method involves mapping the post-QC Illumina reads to the post-linclust cluster representatives via `mmseqs map`. To get the …