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This is a follow-up of #118 where host "ID73" was the index case of the entire epidemic. My output from the ABM did not identify this host, as spotted by @ArtPoon , now the code is fixed.
I have n…
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It would be nice to have a function to calculate the selection test described in the Relate paper (p.16 of supplement) for mutations in a given tree. Or perhaps this is something that could be added t…
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Steps to lineage: EL.1 >> C14925T >> C7063T >> A13712G (orf1b:K82R)
Earliest: 2023-01-25
Recent: 2023-04-14
GISAID: A13712G, C7063T, C14925T
circulating: Europe (mostly poland), china, israel, sin…
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In Bayesian phylogenetics, "rogue taxa" are taxa that move around the tree. I definitely think that this is what we were seeing with the long branches in the 125 set. See, e.g. https://scholar.google.…
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In the case of Eve Happy, members of generation 282 are currently dying. Eve is only showing as 250 deep, while prior lineages show this well.
![image](https://github.com/user-attachments/assets/8d31…
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**Describe the bug**
We have some ADF orchectrated python activity jobs which trigger a python file in dbfs.
Lineage for the same is not getting reflected in purview. I can see some events related…
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Hello, I don't have GISAID_FEED, so I can't use gisaid data. However, the location number is extramley small.
['Asia / Pakistan', 'Europe / United Kingdom',
'Europe / United Kingdom / England…
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The dependencies should not depend on the time stamp. Instead, they form a lineage structure that should be explicit. In general, the migrations my form a tree, such that one can accommodate a .../tes…
ghost updated
4 years ago
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Currently I'm working on a simulation project that generates polytomic trees (e.g. non-binary, with a threeway split).
Current support fails with the error:
> "Error : length(b_times) == length(…
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Hi,
I've successfully built LineageOS 17.1 for Cepheus using your device trees in January, but I've tried doing updated builds in Februaury and again last week. Each time, they seems to build success…