cov-lineages pango-designation issues

cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme

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KP.2.3+S:K535T(29 seqs, 4 countries)

#2670 DailyCovidCases opened 23 hours ago
0
LF.3.1 with S:P>L1143F in USA (42)

#2669 FedeGueli opened 1 day ago
0
KP.2.3 (S:∆S31) + ORF1a:R1973S (60 seq, 17 countries, 5 continents; June 28)

#2668 ryhisner opened 2 days ago
1
JN.1+S:F456L branch that should be designated

#2667 DailyCovidCases opened 2 days ago
0
JN.1.16.1 with S:T33A and S:N185D (21 seqs, 10 countries)

#2666 NkRMnZr opened 5 days ago
1
JN.1.18.3 + S:∆S31, S:R190S (37 seqs, 6 continents, 16 countries, Jun 28)

#2665 ryhisner opened 6 days ago
3
KP.3.1 + S:ins16_MPVF, ORF1a:T1854I (89 seq, Jun 25)

#2664 ryhisner opened 1 week ago
4
LE.1 (JN.1.4.7.1) got FLiRT (6 recent samples in 4 countries + 2 from Italy via GBW in a separate branch with further S:G252D)

#2663 FedeGueli opened 1 week ago
3
LB.1.3 + S:K147E, Y660R (2-nuc) (16 seq, 7 countries, Jun 28)

#2662 ryhisner opened 1 week ago
2
New JN.1.16.1 plus S:S31del after Orf1b:Q215K (C14110A) (28 samples)

#2661 FedeGueli opened 1 week ago
2
JN.1+S:F456L possible dead branch

#2660 DailyCovidCases closed 2 days ago
9
New JN.1.11.1 sublineage with FLiRT and Orf9b:T72I growing in Scotland (19)

#2659 FedeGueli opened 1 week ago
1
Update lineage_notes.txt

#2658 FedeGueli opened 1 week ago
0
JN.1+S:F456L with C25566T branch (5 seqs)

#2657 DailyCovidCases closed 1 week ago
1
JN.1+S:F456L with C25566T branch (5 seqs)

#2656 DailyCovidCases closed 1 week ago
0
JN.1.3+S:F456L with Orf8:Q18* (C27945T branch) (307 seqs)

#2655 DailyCovidCases opened 1 week ago
3
JN.1.18.2 (S:F59S) FLirt lineage emerging fast in Puerto Rico - 10% prevalence (50 samples) with further S:P217S, S:N1125S (37) and a Canadian cluster with S:Q675R (8)

#2654 FedeGueli opened 2 weeks ago
3
JN.1.18.2 (59S) Flirt lineage with Orf10:Q29* (16 seqs 4 continents)

#2653 FedeGueli opened 2 weeks ago
0
New DeFLiRT : JN.1.16.1 with S:S31del and Orf8:Q29* emerged recently in France (53 seqs, 12 countries )

#2652 FedeGueli opened 2 weeks ago
5
JN.1.34+S:F456L with C8802T branch (23 seqs, 9 countries)

#2651 DailyCovidCases closed 5 days ago
0
JN.1+S:Q677L+S:F456L with C14676T branch (25 seqs)

#2650 DailyCovidCases closed 3 days ago
1
KP.1.1+Orf1b:L2213F+S:N185del, F186I(167 seqs, 22 countries)

#2649 aviczhl2 opened 2 weeks ago
2
Update lineage_notes.txt

#2648 FedeGueli closed 2 weeks ago
1
Update lineage_notes.txt

#2647 FedeGueli closed 2 weeks ago
0
KP.3.1 + ∆29728-29776 (bigger s2m deletion) [47 seq, 4 continents, June 7]

#2646 ryhisner opened 3 weeks ago
0
JN.1+S:F456L with C27110T branch (33 seqs, 6 countries)

#2645 DailyCovidCases closed 3 days ago
4
Suggestion to broaden JN.1.39.1

#2644 aviczhl2 opened 3 weeks ago
2
JN.1+S:F456L+S:R346T with T17859C branch (22 seqs, 4 countries)

#2643 DailyCovidCases opened 3 weeks ago
1
Update lineage_notes.txt

#2642 Memorablea closed 2 weeks ago
4
JN.1+S:F456L with C28603T branch (58 seqs, 15 countries)

#2641 DailyCovidCases opened 3 weeks ago
1
JN.1.30.1+S:F456L with Orf1a:I1128F (52 seqs, 14 countries)

#2640 DailyCovidCases closed 6 days ago
2
JN.1+S:F456L with Orf1b:L2560F (16 seqs, 10 countries)

#2639 DailyCovidCases opened 3 weeks ago
1
JN.1+S:F456L with C22858T branch (23 seqs, 3 countries)

#2638 DailyCovidCases opened 3 weeks ago
6
JN.1+S:F456L with C17119T branch (21 seqs, 2 countries) with further S:K150I and N:G214D (26 seqs)

#2637 DailyCovidCases opened 3 weeks ago
4
JN.1+S:F456L with G17562T branch (87 seqs)

#2636 DailyCovidCases opened 3 weeks ago
1
JN.1+S:F456L with C24863T branch (25 seqs, 5 countries)

#2635 DailyCovidCases opened 3 weeks ago
1
JN.1+S:F456L with C21911T branch (35 seqs, 4 countries)

#2634 DailyCovidCases opened 3 weeks ago
3
JN.1+S:F456L with C775T branch (10 seqs, Spain)

#2633 DailyCovidCases closed 1 week ago
1
JN.1+S:L176F+S:F456L with C18894T branch (33 seqs, 11 countries)

#2632 DailyCovidCases closed 1 week ago
1
Lineage note distinctive mutation for JN.1.56 is incorrect.

#2631 alurqu opened 4 weeks ago
1
JN.1.4 + S:F456L with C9979T branch (18 seqs, 2 countries)

#2630 DailyCovidCases closed 2 weeks ago
2
JN.1.4.5+S:F456L with C20823T branch (21 seqs, 3 countries)

#2629 DailyCovidCases closed 1 week ago
3
Update lineage_notes.txt

#2628 FedeGueli closed 2 weeks ago
1
KP.3 with C18490T(ORF1b:P1675S)(309seqs)

#2627 Memorablea closed 3 weeks ago
3
Replace broken pango.network links with archive.org versions

#2626 jshoyer closed 4 weeks ago
1
JN.1.4+S:S60P(82 seqs, 7 countries)

#2625 aviczhl2 closed 3 weeks ago
1
JN.1.22/XDD.1 recombinant(41 seqs, 2 countries, 5 with S:F456L)

#2624 aviczhl2 opened 1 month ago
2
Undesignated JN.1.18 plus S:F59S went FLiRT (44) with a S:F65Y,Q183P branch (11)

#2623 FedeGueli opened 1 month ago
7
JN.1 + S:F456L with C26873T branch (59 seqs, 11 countries)

#2622 DailyCovidCases closed 3 days ago
1
JN.1 + S:F456L with Orf3a:A54S (18 seqs)

#2621 DailyCovidCases closed 1 week ago
1