-
Just when I thought I was ready to complete the back-merge and soft freeze, @aclum and I discovered that an NMDC contributor had entered data into MongoDB where slot `S` was mandatory and required for…
-
I seek clarification regarding the representation of an custom ontology within a LinkML schema when creating a JSON data mapping to custom ontology classes.
While I am aware LinkML supports the tra…
-
This replaces:
- #1166.
It looks like there are some situations where foward ref detection falsely assumes no forward reference when it should use one
This is because `_sort_classes` is appl…
-
given that a principal use case of our schema-as-software (the importable `nmdc_schema` package) is to support the maintenance of schema-conformant databases (e.g. `nmdc:Database` JSON), it seems reas…
-
Example dynamic enum:
https://github.com/dosumis/LinkML_cas_scratch/blob/main/schema/scratch/scratch.yaml#L19-L27
If this is materialized by the schema maintainer, then it acts like a normal enu…
-
The global definition for `protocol_link` doesn't assert `multivalued: true` but `Study.slot_usage.protocol_link` does.
I can't figure out [who added that slot_usage](https://github.com/microbiomed…
-
### Current state
As of now, the Dataset class uses the following IRIs to define its slots (slot name formatting came from linkml and seems related to how the slots were defined - through attribute…
mslw updated
7 months ago
-
```shell
poetry run linkml-convert \
--output data_7.ttl \
--target-class Database \
--schema src/schema/nmdc.yaml data_7.json
```
see also #500
-
Here are issues I have been experiencing with linkml-cookiecutter:
Per https://github.com/linkml/linkml-project-cookiecutter/issues/51 we have limited control over linkml generators via `gen-proje…
-
See https://github.com/linkml/linkml/issues/797
We want to make sure everything still works when sssom starts importing sssom_schema