biobricks-ai biobricks issues

biobricks-ai / biobricks

BioBricks makes loading data from biological datasets and databases easy. Python and R interfaces, data version control, and an API for pulling datasets that have been converted to easy-to-use formats.

https://docs.biobricks.ai

MIT License

5 stars 2 forks source link

issues

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threading refactor

#37 bhlieberman opened 1 month ago
0
Typo: `s/get_depencies/get_dependencies/g`

#36 zmughal opened 1 month ago
0
Refactor threading in DownloadManager

#35 bhlieberman closed 1 month ago
3
`biobricks install openfda` is not working

#34 zmughal opened 1 month ago
0
data description in the .bb/linkml.yaml becomes the source of truth for brick readers

#32 tomlue opened 3 months ago
0
add data description to the linkml.yaml

#30 tomlue opened 3 months ago
0
iterate through bricks and add .bb directory with linkml.yaml

#29 tomlue opened 3 months ago
2
biobricks should be required to have the .bb directory

#28 tomlue opened 3 months ago
1
brick metadata

#27 tomlue opened 3 months ago
0
need more clarity in the terminal when we ask for a token. Can we copy what `gh` does?

#26 tomlue opened 3 months ago
0
Checking downloaded files: after download and on reinstall

#25 zmughal opened 3 months ago
0
after downloading a brick generate a summary report

#24 tomlue opened 3 months ago
0
Only add to git safe.directory when needed

#23 zmughal opened 3 months ago
0
Refactor downloader

#22 zmughal closed 3 months ago
1
install pubchem and chembl seems to be having issues?

#21 tomlue closed 3 months ago
0
when running the tests don't overwrite the .biobricks config

#20 tomlue closed 3 months ago
1
add parallel downloading

#19 tomlue closed 3 months ago
1
Biobricks Fails on Windows for Users Without Symlink Capabilities

#18 tomlue closed 4 months ago
0
get pipx install biobricks working

#17 tomlue closed 4 months ago
1
Pushing a single directory (e.g., `brick/`) with `dvc` then pulling fails

#16 zmughal closed 4 months ago
1
Regression with biobricks-0.2.0: file not found error for missing directory `data/`

#15 zmughal closed 7 months ago
1
cannot uninstall bricks

#14 tomlue closed 7 months ago
0
When multiple users are using the same biobricks library there are ownership issues

#13 tomlue closed 7 months ago
1
Upgrading brick: missing remove subcommand

#12 zmughal closed 8 months ago
0
Data downloads are too big for clinvar download

#11 svsuresh closed 8 months ago
2
Logging should go to stderr

#10 zmughal closed 9 months ago
0
Broken requirements

#9 AndresMpa closed 9 months ago
0
Issue with loading CTDbase brick

#8 Larsdegroot closed 8 months ago
2
`biobricks add` duplicates dependencies in dependencies.txt when they are added twice

#6 tomlue closed 1 year ago
0
add logging to bb.pull function with progress bars

#4 tomlue closed 1 year ago
0
Add email to config and generate custom token

#2 tomlue closed 7 months ago
1