Upgrading brick: missing remove subcommand

biobricks-ai / biobricks

BioBricks makes loading data from biological datasets and databases easy. Python and R interfaces, data version control, and an API for pulling datasets that have been converted to easy-to-use formats.

https://docs.biobricks.ai

MIT License

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Upgrading brick: missing remove subcommand #12

Closed zmughal closed 11 months ago

zmughal commented 11 months ago

Steps to reproduce:

Previously have a dependency added using add: biobricks add ice

Run biobricks add ice again to upgrade. Error:

ValueError: 'ice' already exists. To update, run:
       `biobricks remove ice`
       and then `biobricks add ice`

Try to run biobricks remove ice. Error:

Usage: biobricks [OPTIONS] COMMAND [ARGS]...
Try 'biobricks --help' for help.

Error: No such command 'remove'.

Work around: remove the line with the brick manually in .bb/dependencies.txt