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biobricks-ai / biobricks

BioBricks makes loading data from biological datasets and databases easy. Python and R interfaces, data version control, and an API for pulling datasets that have been converted to easy-to-use formats.
https://docs.biobricks.ai
MIT License
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BioBricks

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BioBricks makes loading data from biological datasets easy.

pipx install biobricks

initialize

To get started configure biobricks with a path for bricks and a biobricks.ai token:

biobricks configure
> Choose path to store bricks: <input a local path>
> Input a token from biobricks.ai/token: <this is your access token>

Install and Use Bricks

To install a brick the command line command:

> biobricks install tox21

You can then use the brick in python as below:

import biobricks as bb
bb.assets('tox21') # get the paths for the 'tox21' brick

To list the bricks currently available visit status.biobricks.ai