get pipx install biobricks working

biobricks-ai / biobricks

BioBricks makes loading data from biological datasets and databases easy. Python and R interfaces, data version control, and an API for pulling datasets that have been converted to easy-to-use formats.

https://docs.biobricks.ai

MIT License

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get pipx install biobricks working #17

Closed tomlue closed 4 months ago

tomlue commented 5 months ago

Right now when a new user does pipx install biobricks they also need to run pipx install dvc or the system won't work.

I think this is because biobricks is probably running a command line version of dvc somewhere.

tomlue commented 4 months ago

as of d005f364ae985b13c983d38963d966a486e8cf4d this issue should be fixed.

pipx install biobricks
biobricks configure
biobricks install hgnc

There are also some better tests and github actions.