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```
stacktrace=java.lang.IllegalArgumentException
at java.nio.Buffer.position(Buffer.java:244)
at loci.common.NIOFileHandle.buffer(NIOFileHandle.java:650)
at loci.common.NIOFileHandle.skipBytes…
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Thanks for creating this extraordinary tool. Currently, our lab found a VNTR loci by long read sequencing data, and is really looking forward to validating our finding by genotyping it in sea-like NGS…
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What's the difference between output.prefix_germline file and output.prefix_somatic file, and why some of their MSI loci are same.How did you get the MSI loci in the output.prefix_germline file?
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### Why this matters
- Users could accidentally set `min_sample_reads` too high and need to know this is why the run fails
- Could occur when doing extreme subsampling, as it is more likely very s…
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Hello!
I am running into an issue when running the pogemom.pl script (Not the Input_POGENOM pipeline, as I already had a VCF file available from bcftools). I am using the v.0.8.3 release. The comman…
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Revit 2023.1.40.56
Genius Loci 2024.5.29
DynamoIronPython 2.5
'Material Find Texture Path' is reporting the image file name rather than the full path of the image.
Using the Architectural templa…
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I am using python-bioformats to read TIFF file. I get following this everytime.
```
09:04:19.664 [Thread-0] DEBUG loci.common.NIOByteBufferProvider - Using mapped byte buffer? false
09:04:19.675 …
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Eric here...
I am running some stuff on the Tobique salmon using a ckmr object that includes the chromosomes (it is 12 microsats, with two of them on the same chromosome). When I do that, everythi…
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Hi guys,
i tried to write an OME-TIFF using python-bioformats but I got stuck. Any help is really appreciated
This is the script:
```
import bioformats.omexml as ome
import javabridge as jv…
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I'm looking for a way to programmatically access the currently selected residues. I checked the methods in `viewerInstance.visual` but there was no obvious way of getting a data object.