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Hi all,
the bigg model database only contains a very old RECON from around 10 years ago, i.e., Recon1 which nobody is using any more. It would be great if the latest versions of RECON2 could be added…
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I've been trying to do some larger runs with fireworks and noticed that a lot of the time a firework will get locked and prevent further execution. I think this is a recent issue since the switch to …
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Hi @ValWood
It looks like you are the one who requested 'nucleobase-containing small molecule metabolic process'. It seems to have been intended as a grouping term for nucleobases, a nucleosides, …
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follows https://github.com/Daniel-Mietchen/events/issues/321 .
The call is to open next week. More via
https://www.scidatacon.org/IDW2018/ .
See https://github.com/Daniel-Mietchen/events/blob/m…
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Original ticket https://networkx.lanl.gov/trac/ticket/158
Reported 2008-05-06 by trac user syzheng, assigned to @hagberg.
I'm wondering if networkx has any plan to add some clustering algorithms in t…
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Original ticket https://networkx.lanl.gov/trac/ticket/239
Reported 2009-04-24 by @hagberg, assigned to @hagberg.
http://perso.crans.org/aynaud/communities/
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While reading `.yaml` files for indexing with Elasticsearch, I found syntax errors in `genes` fields of 8 models similar to the following errors:
```Diff
iSyn731/reactions.yaml:
- genes: (sll1102 …
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I started to learn cameo and tried following code.
```
from cobra import Model, Metabolite, Reaction
from cameo.core.solver_based_model import to_solver_based_model
# max cone * cone_margin + …
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Hello:
I updated to Gephi 0.9.1 from Gephi 0.8.2. Machine is IOS with El Captain version 10.11.4.
In the old version, I was able to import .csv files with source and target columns (target columns…
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- Repository: https://github.com/AndreaRMICL/MetaboSignal
- [x] I understand that by submitting my package to _Bioconductor_,
the package source and all review commentary are visible to the
genera…