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**memote** is reporting missing NGAM when the lower bound of R_ATPM is zero.
I think it should check for the presence of NGAM but not force a particular value.
The principle of constraint-based …
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Reactions like this should probably be excepted:
Na(+)-translocating NADH-quinone - NQR
`h_c + 2.0 na1_c + nadh_c + q8_im --> 2.0 na1_p + nad_c + q8h2_im`
Cytochrome oxidase bd (ubiquinol-8: 2 …
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### Problem description
I'm following the [instructions](http://carveme.readthedocs.io/en/latest/installation.html) to install carveme and the carveme_init script fails with a "Connection reset by …
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Glucose stereoisomers
D-Glucose, Beta-D-Glucose, and Alpha-D-Glucose appear all over the model.
* Are they properly represented?
* Are they properly connected?
Consider this type of reaction:
h…
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### Problem description
When the -r option is specified, the carve command fails with a "unrecognized arguments" error.
I have a fix. Are you willing to accept pull requests?
### Actual outpu…
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This is rather an *idea for new package* that depends on CobraPy.
I have written a small package to convert relative abundance of macromolecules obtained from different sets of OMIC data into stoi…
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Does anyone has succeed installing memote using python 2.7 versions?
I've tried it on Linux and MacOS and for both memote installation required a python 3 version.
If it is the case, it should b…
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Naming convention from the Supplement of Thiele & Palson's A protocol for generating a high-quality genome-scale metabolic reconstruction. 2010
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I ran across this while getting mminte running on cobra 0.6. With cobra 0.5.11, when two models are added with the "+=" operator, the objective is updated too because of the way reaction objective coe…
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I feel that the blue banner (because it stays as one proceeds through other pages) should have exactly the same options as the 3 boxes on the entry page and not something different:
Search or Explore…
vvons updated
8 years ago