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As part of the signaling workshop, Helen and I have compiled a list of annotations to review wrt GO:0060070 'canonical Wnt signaling pathway'.
There is a Google spreadsheet that lists 8 different s…
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So far we've been "collapsing/consolidating," based on certain criteria (e.g. GP + term + extensions are same), multiple GPAD lines into distinct assertion individuals containing multiple evidence. I'…
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We need to provide annotation guidelines for how curators should annotate interacting proteins (i.e. MF IPI annotations) in GO-CAM models.
For now, assuming the interactors are from the same specie…
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- [ ] Will Reactome accept the strategy of assigning Molecular Functions as enablers to Reactome Reactions that get translated as Molecular Events.
- [ ] If so, can we provide a flat file as an input…
ukemi updated
12 months ago
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Hello,
By creating models for secondary metabolites biosynthesis I realized that part of the ChEBI chemicals are not available with the tool.
As an example, within the P. expansum patulin biosynthes…
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RO relations used in Noctua come with domain and range constraints (note to GOC members: I am talking about OWL domain and range, not the pseudo domain and range constraints added to the AE relations)…
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To recreate:
1. create two activity units A1 A2
2. assign the same BP class to both units
E.g
In the underlying RDF, this renders as two disconnected BPs, also in the GE:
(pleas…
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To bring existing GO-CAM models into compliance with our current annotation rules and gp2term relations as specified in the GAF2.2 and GPAD2.0 specs, we need to check for MFs that 'occurs in' a protei…
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Check for consistency.
Maybe also check with GO Rules ?
goodb updated
5 years ago
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Translate whatever `has_regulation_target` annotation extensions satisfy one of the scenarios described in the [google doc](https://docs.google.com/document/d/1AgkJqA4-V0HG0SaDiNO9ENTxaQC_1HwsmwyhyHhu…