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geneontology
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minerva
BSD 3-Clause "New" or "Revised" License
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Subcommand --import-owl-models shows poor performance in CPU-rich environments
#549
kltm
opened
1 month ago
1
Output interacting taxon in correct column.
#548
balhoff
closed
2 weeks ago
0
Make all migrations / ontology maintenance run automatically
#547
kltm
opened
2 months ago
1
Add action to check conformance with GPAD ShEx on each change.
#546
balhoff
opened
2 months ago
0
Change how interacting taxon annotations in Noctua are exported to GPAD
#545
vanaukenk
closed
1 month ago
8
add action to check conformance with "GPAD ShEx" on each change
#544
balhoff
opened
3 months ago
12
Fix Biopax URL in test.
#543
balhoff
closed
4 months ago
0
Add cli option to allow running checks against a graphstore journal.
#542
balhoff
closed
4 months ago
9
In some cases, minerva exits early exception when performing QC on graphstore
#541
kltm
closed
4 months ago
3
WIP: update input/output/transports relations to primary input/primary output in GO-CAMs
#540
vanaukenk
opened
6 months ago
0
Add feature or workflow to produce both inferred and non-inferred GPADs
#539
kltm
opened
7 months ago
1
Fix obsolete GO terms in test models.
#538
balhoff
closed
6 months ago
0
Add 'has primary input/output' relations to allowed GPAD extensions
#537
balhoff
closed
2 months ago
0
Update tests to run properly
#536
balhoff
closed
8 months ago
0
Remove 'enabled by' as an extension relation
#535
balhoff
closed
8 months ago
1
Annotation Preview lists additional "enabled by GENEPRODUCT" in extensions
#534
suzialeksander
opened
10 months ago
5
missing ISO annotatins in noctua annotation preview
#532
LiNiMGI
opened
10 months ago
12
Don't follow causal property chains for regulation targets when outputting conventional annotations?
#531
ukemi
opened
10 months ago
0
Question about how annotation date updates are assigned in Noctua
#530
vanaukenk
opened
10 months ago
3
Bump org.obolibrary.robot:robot-core from 1.7.1 to 1.9.5
#529
dependabot[bot]
opened
1 year ago
0
Bump org.eclipse.jetty:jetty-xml from 9.2.3.v20140905 to 9.4.52.v20230823
#528
dependabot[bot]
opened
1 year ago
0
causally_upstream_of _or _within -o- part _of -> causally_upstream_of _or _within
#527
ukemi
closed
1 month ago
12
Bump org.apache.maven.wagon:wagon-ssh from 2.8 to 3.5.3
#526
dependabot[bot]
opened
1 year ago
0
Bump org.glassfish.jersey.media:jersey-media-json-processing from 2.28 to 3.1.3
#525
dependabot[bot]
opened
1 year ago
0
Annotation from a production model is missing on snapshot
#524
ukemi
closed
1 year ago
7
Global date change when using the graph editor (x-hint-layout, etc.)
#533
ukemi
opened
1 year ago
9
Bump owl-to-rules_2.12 from 0.3.6 to 0.3.8
#523
dependabot[bot]
closed
1 year ago
0
Bump jersey-media-json-processing from 2.28 to 3.1.2
#522
dependabot[bot]
closed
1 year ago
1
Bump httpclient from 4.5.13 to 4.5.14
#521
dependabot[bot]
closed
1 year ago
0
Bump maven-surefire-plugin from 2.18.1 to 3.1.2
#520
dependabot[bot]
closed
1 year ago
0
Bump sesame.version from 2.7.12 to 4.1.2
#519
dependabot[bot]
opened
1 year ago
0
Bump robot-core from 1.7.1 to 1.9.4
#518
dependabot[bot]
closed
1 year ago
1
Bump maven-source-plugin from 2.4 to 3.3.0
#517
dependabot[bot]
closed
1 year ago
0
Bump maven-assembly-plugin from 2.5.3 to 3.6.0
#516
dependabot[bot]
closed
1 year ago
0
Replace CARO anatomical entity with Uberon.
#515
balhoff
closed
1 year ago
6
Implement option to preserve evidence when copying a model.
#514
balhoff
closed
1 year ago
0
optionally preserve evidence in model copy
#513
balhoff
closed
1 year ago
5
Write curator requirements doc for model copy with evidence
#512
vanaukenk
closed
1 year ago
1
categorize obsolete terms into GO aspect
#511
balhoff
opened
1 year ago
10
Remove 'involved in' from allowed extensions relations
#510
balhoff
closed
1 year ago
0
Increment version.
#509
balhoff
closed
1 year ago
0
load provided triples file into triplestore before running update command, then unload
#508
balhoff
opened
1 year ago
0
Add the number of Molecular events to the report for Reactome loads
#507
ukemi
opened
1 year ago
2
return any type mentioned in ShEx in root types
#506
balhoff
opened
1 year ago
2
Dump model on each save.
#505
balhoff
closed
1 year ago
5
Maintain correct set of in_taxon model annotations.
#504
balhoff
opened
1 year ago
0
remove old in_taxon triples when saving
#503
balhoff
opened
1 year ago
5
Explore adding auto-flush to disk to minerva
#502
kltm
closed
1 year ago
9
Add command to dump models to JSON files.
#501
balhoff
closed
2 years ago
1
add a CLI command to dump all models in JSON response format
#500
balhoff
closed
2 years ago
15
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