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GO:0000775
chromosome, pericentric region
This has the synonym centromere
This seems to cause problems, at least for S. pombe.
The centromere is modular and composed of an inner core
flanked by rep…
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Is there a convenience function for constructing a GInteractions object from a `findOverlaps()` call? It would be a simple wrapper.
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we have
GO:0016574 : histone ubiquitination
--GO:0010390 : histone monoubiquitination
I want to capture that the experiments I'm annotating refer to
histone H2B K120 ubiquitination
(I used K120, t…
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Dear Alicia,
I am currently running analyses with NucleoATAC on my ATAC-seq data.
After several QC, it seems to me my ATAC-libraries were of reasonable quality. But since it is the first time i'am w…
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I am using MACS2 to call open chromatin regions in a MNase-seq dataset. However I'm generating negative p-values after calling broad peaks using the following commands:
macs2 callpeak -t treatment.s.b…
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decreased protein localization to chromatin (cf FYPO:0000452)
decreased protein localization to chromatin at transcribed regions
as above, + occurs_at SO:0000502
spt6-1 high temp YES evidence ChIP-…
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The chromatin immunoprecipitation assay (ChIP) is typically used to determine what proteins “bind” to what sequence of DNA. The limitation of the assay really restricts the data to what proteins “ass…
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ntr: abolished protein localization to centromeric chromatin during vegetative growth
child of
abolished protein localization to chromatin during vegetative growth
and
abnormal protein localization…
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Apologies if this is in another ticket but I can't find it, so I probably didnt request it
v
Original comment by: ValWood
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Hi,
Is occ.bedgraph a combination of lower and uper_bound.bedgraph?
What is the different between occ.bedgraph vs nucleoatac_signal.bedgraph?
Thanks,
Duy