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Hello,
I am analyzing the results of a in silico perturbation experiment, and I would like to make sure my interpretation of the vector plot is correct.
To clarify, is it correct to say that a …
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E.g. they could be used by introducing perturbations into both source and target sentences.
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**Short description of the diagnostic**
Calculation of radiative fluxes based on the Approximate Radiative Perturbation method (Taylor et al., 2007, https://journals.ametsoc.org/doi/pdf/10.1175/JCL…
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Hi!
I was wondering about fine-tuning the model for perturbation prediction on larger datasets containing multiple batches. Different batches can be e.g. different cell lines. Each perturbation ca…
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The Simultaneous Perturbation Stochastic Approximation (SPSA) optimisation method is a faster optimisation method.
> If the number of terms being optimized is p, then the finite-difference method…
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So far, we can simulate the *E. coli* regulatory network using SERGIO in a "wild-type" scenario.
To simulate the *E. coli* regulatory network under a CRISPRa/i perturbation, we need to disconnect t…
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### Question
I want to add a graph to the observation space by
```
# Create NetworkX graph
G = nx.Graph()
# Add nodes (C-alpha atoms) with 320-dimensional zero embeddings
for _, ro…
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This issue focuses on introducing a **proofreading mechanism** for the cell division process in the simulation. In this system, each cell is represented as a neural network, and its "genetic material"…
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In the page "Perturbation_theory_(quantum_mechanics)", some subtree are put at the same level as their parent:
![image](https://user-images.githubusercontent.com/76477726/126087071-28d6754b-62a0-4a16…
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Hello,
I want to use PRS for trajectory analysis. First, I do PCA analysis covering all modes. I use the covariant matrix that I obtained as a result of the analysis for analysis. However, when I c…